Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium371g00002 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCAGGAGACGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTGACTAAGGCTAAAGGAGAATCGGTGGCCCTGTATGTGAAGTTTGGTAACCAGAAGCTTGTGCTTGGAACGCTTTCTTCTGATAAATTTCCTCAAATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCATAGCTGGAAAAATGGGAGTATCTTCTTTACCGGATTTAAAGCTCAATCTCAGTCGGAGTCGGATAATGATGAAGATTCTGAAGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGGAAACCTGACTTTGAGATTAAGCATGGTGTCAAACCTGATGAAGCTAAACAGAAAAAGACAGCAGATCCAAAGAAAAATGAGAAGGCTAAGGAAAAGGATGCAGATGGTGAAGATGAAGATTCATCCGAATCTGATTCTGACGATGATTCAAGTGAAGATAAGCCCACAACAAATGGTGACAGAGAAAGTAGTGAAGGTGATGAGGATAGCGATGAAGAGGATGAGGATGATGACGAGGATGAGGATGATGATGATGATGAATCGGATGAGGAGACACCCAAGAAGATTGAAGCAGGCAAGAAGCGGAATATTGACTCTGCCAAGAAAACAACTATCCCTGTGAAGAAGGCAAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGTCCATGTCGCAACGCCTCACCCTTCTAAGCAGGCTGGAAAAGCAATTGCAGATAACAAGCGGCAGACTCCGAAGTCAGGGGGAGATTACAGCTGCAAGCCTTGCAGCAGGTCATTTAAGACAGAAGATGCCTTAAACTCTCATAATAGGGCGAAGCACAGTGCTAAGTAA 921 0.4278 MEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKAKGESVALYVKFGNQKLVLGTLSSDKFPQISYDLIFEKEFELSHSWKNGSIFFTGFKAQSQSESDNDEDSEDFDEDIPVSAANGKPDFEIKHGVKPDEAKQKKTADPKKNEKAKEKDADGEDEDSSESDSDDDSSEDKPTTNGDRESSEGDEDSDEEDEDDDEDEDDDDDESDEETPKKIEAGKKRNIDSAKKTTIPVKKAKFVTPQKTDSKNVVHVATPHPSKQAGKAIADNKRQTPKSGGDYSCKPCSRSFKTEDALNSHNRAKHSAK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium371g00002 306 MobiDBLite consensus disorder prediction 156 170 - -
Vium371g00002 306 Pfam C2H2-type zinc finger 280 304 - -
Vium371g00002 306 ProSitePatterns Zinc finger C2H2 type domain signature. 282 303 IPR013087 -
Vium371g00002 306 MobiDBLite consensus disorder prediction 124 155 - -
Vium371g00002 306 FunFam Histone deacetylase HDT1 1 98 - -
Vium371g00002 306 MobiDBLite consensus disorder prediction 95 232 - -
Vium371g00002 306 MobiDBLite consensus disorder prediction 212 232 - -
Vium371g00002 306 Gene3D Nucleoplasmin core domain 1 99 - -
Vium371g00002 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 306 IPR013087 -
Vium371g00002 306 MobiDBLite consensus disorder prediction 184 211 - -
Vium371g00002 306 MobiDBLite consensus disorder prediction 256 306 - -
Vium371g00002 306 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium371g00002 Vium-Chr371 5233 16373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium371g00002 1 93 C2H2 Transcription Factor Family AT3G44750 56.989 6.81e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium371g00002 NPL 1.2e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium371g00002 - - gmx:100812152 412.92