Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3709g00001 ATGACTTGCTTTCTCATTGAGTGTTGCATTATTCTTCCGATCTTCCAGGCAAGTCCGGTATTCTTGCAAAACAATGCGCCTACAGGTCCACCCACAGCGCCACCAGCTGCAGAAGACACAGAGTTAGCTATGGCCATCAATGCATCCCTTCAGTCTGCCATCCAGGAGAGGCCATCCTTTCCTCATACACAACCAAACTCTGACGCAAGCTCTTCAAGCACTGCAGTGAATACAGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAGTGAAAATGAGTTGGTGCAAGAAACTAAAACTGGTGGCAATGGTGATCACCACCAAAGTCATGTTAATGCTAGTGAATTGGATTTCAATCCATCGGCTCCACCAATCGTGGGTGATATTCCAACAGATGGCCCAATTCAGTATCCATCAATTGATTTAAGCCCTGTTGATATGGCATCTTCAGATGTGGAGAAGCTTCCTAATGGAGAAGGAAAAACTGCAAGTGGAAGTGGCTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATTCCCTGTGGTCATGTTGCCGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTGTGTCGAGGTAAGATAGACCAGATCATAAAGCTATACCATGTTTGA 672 0.4554 MTCFLIECCIILPIFQASPVFLQNNAPTGPPTAPPAAEDTELAMAINASLQSAIQERPSFPHTQPNSDASSSSTAVNTGNHGFLGTPNSNTSENELVQETKTGGNGDHHQSHVNASELDFNPSAPPIVGDIPTDGPIQYPSIDLSPVDMASSDVEKLPNGEGKTASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRGKIDQIIKLYHV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3709g00001 223 ProSiteProfiles Zinc finger RING-type profile. 172 211 IPR001841 -
Vium3709g00001 223 SUPERFAMILY RING/U-box 171 217 - -
Vium3709g00001 223 SMART ring_2 172 210 IPR001841 -
Vium3709g00001 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 222 IPR013083 -
Vium3709g00001 223 MobiDBLite consensus disorder prediction 58 118 - -
Vium3709g00001 223 Pfam Zinc finger, C3HC4 type (RING finger) 170 217 - -
Vium3709g00001 223 CDD RING-HC_XBAT35-like 168 221 - -
Vium3709g00001 223 MobiDBLite consensus disorder prediction 58 125 - -
Vium3709g00001 223 PANTHER OS05G0521000 PROTEIN 138 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3709g00001 Vium-Chr3709 5512 7255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3709g00001 162 220 C3H Transcription Factor Family AT3G06140 35.593 1.76e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3709g00001 - - vum:124835389 449.899