Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3708g00020 ATGATCGTGAGTCCGAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGTCCATTCCGATGTTGGACGTGAAGTATCATATTTGCGTTGCGCAAGAACACAACGTTGAGGTCGTGGTTTCGCCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCACTCTGATTTCATTAAGCATTCCATTTCGGAGACCCCTGCGGCTAGTTTTGTTCCAAATGCGCGTTCTGGTAGCTATGCTGAGATTGGGCCGCGGGTTTCTATGGATGATGAACACATCTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCTTTTTATGCAGTTTTTGATGGTCATGGAGGACCTGATGCTGCTGCTTTTGTTAAGAGAAATGCTATGAAATTGTTTTTTGAAGATGCGGACATGCTGCAGACATATGATACTGATTCGTTCTTTCTAGAGAAGTTAGAGGATTCCCATAGGAGAGCTTTTCTACGGGCAGATATTGCCTTGGCTGATGAACAAACTGTTAGTAGTTCGTGTGGAACGACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGCCGGAGGGGTGTGGCTGTTGAGATGTCTAACGATCACAGGCCAAGTTTTCTGCCGGAACGGCTGAGGGTGGAGGGGGTAGGTGGATTTATTGATGATGGATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGAGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTAAGACTGGCTACATTGACCGAGGAGGATGAGTTTTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGACGAGGATTAAGAAGGCATAATGACCCACAACAGTGTGCTATGGAACTAGTCAAGGAAGCATTGCGCCTGCATACATCGGATAATCTCACTGTGATTGTTGTATGTTTATCACCCATTGAAAGCATTGTTGAATCATGTCCTCCCCAGAGGCGAAGATTCAAAGCCTGCAACCTGTCCGAAGAGGCCCGTAATAGGTTGAAGAGCCTTATTGAGCAAAATTGA 1161 0.4625 MIVSPKMVAEAEIICQQSIPMLDVKYHICVAQEHNVEVVVSPKSPSPSVPIFGQAVNHSDFIKHSISETPAASFVPNARSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPDAAAFVKRNAMKLFFEDADMLQTYDTDSFFLEKLEDSHRRAFLRADIALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSFLPERLRVEGVGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLATLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQQCAMELVKEALRLHTSDNLTVIVVCLSPIESIVESCPPQRRRFKACNLSEEARNRLKSLIEQN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3708g00020 386 SUPERFAMILY PP2C-like 73 351 IPR036457 -
Vium3708g00020 386 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Vium3708g00020 386 FunFam Probable protein phosphatase 2C 22 63 352 - -
Vium3708g00020 386 PANTHER PROTEIN PHOSPHATASE 2C 72 347 IPR015655 GO:0004722|GO:0006470
Vium3708g00020 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Vium3708g00020 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Vium3708g00020 386 CDD PP2Cc 79 349 IPR001932 -
Vium3708g00020 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Vium3708g00020 386 SMART PP2C_4 69 347 IPR001932 -
Vium3708g00020 386 Gene3D - 60 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3708g00020 Vium-Chr3708 113224 115673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3708g00020 1 383 PP2C-type Phosphatase Gene Family AT1G48040 56.091 4.80e-147 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3708g00020 K14803 - gmx:100775577 683.715