Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3708g00007 ATGGATGAAAAACCAAGAAGAACCTGCAACACCCTTTTCACTGACGACGAGATCGACCTTCGACGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCCGGGCTGAAACGAACGGGGAAGAGTTGCAGACTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAGGAACAACTTTTGATCCTGGAGCTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAAAACTATTGGAGAACTCGTGTCCAAAAGCATGCGAAACAGCTCAAATGTGACGTGAACAGCAAACAGTTCAAGGACGCCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCAACTGCCTCGGTCGCCACCAACAATGCATACACCTCTGAGAACAACATTAAAAACAACCAAATAGAGGTTCATAATCTCAAGGACAAAATGGGATTAATCGAACCTTCTCTCATGAACAACGACTTCGTGGGTTCCTACGTCATGCAAAGTCACACCCCAGAGAACAGTAGCACGGCTTTGTCGTCATCGGACTCGTTCGGGACTCAAGTCTCAACAAAATCCGATCTCACCGATTATTACAGCGTTCCGGTTAGCAGTAACAATAACAACGCTACTCCTGCAGATTATTATCAACCCTCTCAAATGAGTTACTCCAACTGCATCGGCAGCCCACCCGGGTTTTTCCCTCAAGGATTGGATTTTCAATCCCTAGATCCGTGGAACCTCCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTCGAAAACATGTTGTTCTTGGAGCAACATCTCATGAACGACAACATGTGA 945 0.4804 MDEKPRRTCNTLFTDDEIDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAATATASVATNNAYTSENNIKNNQIEVHNLKDKMGLIEPSLMNNDFVGSYVMQSHTPENSSTALSSSDSFGTQVSTKSDLTDYYSVPVSSNNNNATPADYYQPSQMSYSNCIGSPPGFFPQGLDFQSLDPWNLQNGDSSDNFWNVENMLFLEQHLMNDNM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3708g00007 314 CDD SANT 24 69 IPR001005 -
Vium3708g00007 314 Gene3D - 79 142 - -
Vium3708g00007 314 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vium3708g00007 314 FunFam MYB transcription factor 79 142 - -
Vium3708g00007 314 CDD SANT 95 118 IPR001005 -
Vium3708g00007 314 Gene3D - 19 75 - -
Vium3708g00007 314 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vium3708g00007 314 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 237 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium3708g00007 314 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vium3708g00007 314 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vium3708g00007 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vium3708g00007 314 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vium3708g00007 314 FunFam Myb transcription factor 22 74 - -
Vium3708g00007 314 SMART sant 74 122 IPR001005 -
Vium3708g00007 314 SMART sant 21 71 IPR001005 -
Vium3708g00007 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3708g00007 Vium-Chr3708 57940 60247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3708g00007 1 241 MYB Transcription Factor Family AT3G06490 62.205 3.37e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3708g00007 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3708g00007 K09422 - gmx:100791349 504.982