Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3708g00002 ATGTCCCTTTTCAAGATGAACATCATCAATGTTATTCTCATTCTCCCTTTCATATGTTTCTATGTTCTGAGTACTTTCTTCATTAAAGCATCTGCAGTAAATGCAGCATACGAGTCTGATAGAATAATCGATCTTCCTGGTCAATCTTCAACCCCCTCAATCTCACACTTTTCAGGTTACATCACTGTCAATGAAAACCATGGAAGGGCCCTTTTCTACTGGTTCTTTGAAGCTCAGTCTCAACCCTCCAACAAGCCTCTTCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCTATTGGGTATGGTGCCGTTGTTGAGATTGGACCTCTTATAGTCAGCAAAAACGGGGAAGGACTACATTTCAACCCATATTCCTGGAATCAAGAAGCAAATTTGTTGTTCGTGGAGTCCCCTGTTGGAGTTGGATTTTCTTATACCAACACCTCTTCTGACACCATCTTAGAGGATAACTTAGTTGCTGAGGATGCTTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCCGGGACTTTTTTATATCAGGAGAAAGCTACGGTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATCGAAACAGAGATAGCAACAAATACCCCTTTATTAATCTTAAAGGTTTTATTGTAGGTAACCCAGAGACTGATGATTACTATGACTACAAAGGTCTTCTGGAATATGCATGGAGCCACGCAGTTATATCAGACCAGCAATATGAGAAAGCAAAACAAGTATGCGATTTTAAACAATTTGAATGGTCTAATGAATGCAACAAGGCCATGAACGAAGTCTTCCGAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGGCATGTCATTCAAACAGTACATCCTCAATAGCTGATGATAGCAACAGTGACGGCCCCGAATCATTTACCAAGGTGAGAAATTATCATAGAGAACGAAGGATGAGAATTTTTGGGGGCTATGATCCTTGCTATTCCAATTATGCAGAAGAGTATTTCAACAGAAAAGATGTTCAATCATCATTTCATGCAGACACTAAAAGAGCCACTAACGTGGCATGGAAGGTTTGCAATAATTCCATATTGAGAGCTTACAACTTCTCTGTGTTCTCGGTCCTACCCATCTACACCAAACTCATAAAGGGTGGGCTTAAGATATGGATATACAGTGGAGACGCAGATGGAAGAGTGCCAGTGATAGGGACAAGATATTGCGTTGAGGCTCTTGGATTACCTCTCAAATCTAGGTGGCGAACATGGTACCATGATAATCAGGTTGGAGGAAGAACAGTGGAATATGAAGGATTGACGTATGTGACAGTGAGAGGAGCTGGTCACTTGGTGCCATTGAACAAACCTAGTGAAGCTCTCACTCTTATTAATTCCTTCTTAAAAGGAGACCATCTTCCTATTCGTGGATAA 1452 0.4105 MSLFKMNIINVILILPFICFYVLSTFFIKASAVNAAYESDRIIDLPGQSSTPSISHFSGYITVNENHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLIVSKNGEGLHFNPYSWNQEANLLFVESPVGVGFSYTNTSSDTILEDNLVAEDAYNFLVNWLQRFPQFKSRDFFISGESYGGHYIPQLAELIFDRNRDSNKYPFINLKGFIVGNPETDDYYDYKGLLEYAWSHAVISDQQYEKAKQVCDFKQFEWSNECNKAMNEVFRDYSEIDIYNIYAPACHSNSTSSIADDSNSDGPESFTKVRNYHRERRMRIFGGYDPCYSNYAEEYFNRKDVQSSFHADTKRATNVAWKVCNNSILRAYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRVPVIGTRYCVEALGLPLKSRWRTWYHDNQVGGRTVEYEGLTYVTVRGAGHLVPLNKPSEALTLINSFLKGDHLPIRG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3708g00002 483 ProSitePatterns Serine carboxypeptidases, histidine active site. 446 463 IPR033124 GO:0004185
Vium3708g00002 483 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
Vium3708g00002 483 Gene3D alpha/beta hydrolase 34 304 IPR029058 -
Vium3708g00002 483 FunFam Carboxypeptidase 382 476 - -
Vium3708g00002 483 Gene3D - 334 371 - -
Vium3708g00002 483 Gene3D - 382 476 - -
Vium3708g00002 483 Pfam Serine carboxypeptidase 46 476 IPR001563 GO:0004185|GO:0006508
Vium3708g00002 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Vium3708g00002 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Vium3708g00002 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Vium3708g00002 483 PRINTS Carboxypeptidase C serine protease (S10) family signature 446 459 IPR001563 GO:0004185|GO:0006508
Vium3708g00002 483 FunFam Carboxypeptidase 36 295 - -
Vium3708g00002 483 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 463 IPR001563 GO:0004185|GO:0006508
Vium3708g00002 483 SUPERFAMILY alpha/beta-Hydrolases 39 479 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3708g00002 Vium-Chr3708 1732 4369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3708g00002 335 479 Calmodulin-binding Proteins AT2G22960 28.767 8.48e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3708g00002 K16297 - gmx:100792930 890.952