Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3705g00006 ATGGCTGAAAAAGATGATGGGGTTGGGTTGAGTTTGAGTTTGAGTTTGGGAGTGAATCAACAGTCTTTCAAGGTGAATCACATGCACCACCCTCAACAACAACAACAACAACTGCAGCATCAACCCCGACCTGTTCCCATAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATGTGATACGAGGAATCGACGTGAAATCGACGGTGGAATGTGAGGAAGACAACGGCATTTCGTCACCGAACAGCGCCGTGTCAAGCGTCAGCGGCGGCAAGCGGAGCGAGAGGGACGACGATAATGCTGCGTTGGTGGCCTCTGGAGAGAGGACGTCGTGCTCGCGGGGGAGCGATGACGATGATGGTGGCGGCGGAGACTGCGAAGGCGGGAGGAAGAAACTGAGGCTCACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAACACACTGAATCCGAAACGAAAACAAGCCTTGGCAGAGGAGTTGAATCTGAAACCAAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATGTTGTGAGAATTTAACTGAAGACAATAGAAGGTTGCAGAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCCTCTTGTGAGCGTGGCCACTCGTCTTCAACGTCTTCTCCTGCCGCCGTCCACCCGGTGGTGCCGCCGACTTCTCGCAAACTGTTTGGGGCAAACATCCGGCGGCCGGTGGCCGTCAACACTTGGCCGTTTGATGGCTCATTTCCTCGACCATAA 891 0.5118 MAEKDDGVGLSLSLSLGVNQQSFKVNHMHHPQQQQQQLQHQPRPVPINHNKTLFADLFQLPDRSSDVIRGIDVKSTVECEEDNGISSPNSAVSSVSGGKRSERDDDNAALVASGERTSCSRGSDDDDGGGGDCEGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELRALKSSPQMYMHMNPPTTLTMCPSCERGHSSSTSSPAAVHPVVPPTSRKLFGANIRRPVAVNTWPFDGSFPRP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3705g00006 296 Gene3D - 141 191 - -
Vium3705g00006 296 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
Vium3705g00006 296 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Vium3705g00006 296 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Vium3705g00006 296 MobiDBLite consensus disorder prediction 26 47 - -
Vium3705g00006 296 SUPERFAMILY Homeodomain-like 119 194 IPR009057 -
Vium3705g00006 296 CDD homeodomain 137 194 IPR001356 GO:0003677
Vium3705g00006 296 Coils Coil 199 226 - -
Vium3705g00006 296 FunFam Homeobox-leucine zipper protein 18 121 198 - -
Vium3705g00006 296 MobiDBLite consensus disorder prediction 80 97 - -
Vium3705g00006 296 SMART HOX_1 135 197 IPR001356 GO:0003677
Vium3705g00006 296 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Vium3705g00006 296 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Vium3705g00006 296 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Vium3705g00006 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 260 - -
Vium3705g00006 296 MobiDBLite consensus disorder prediction 119 140 - -
Vium3705g00006 296 MobiDBLite consensus disorder prediction 26 46 - -
Vium3705g00006 296 MobiDBLite consensus disorder prediction 78 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3705g00006 Vium-Chr3705 58169 61034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3705g00006 1 250 Homeobox Transcription Factor Family AT3G60390 57.746 2.78e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium3705g00006 HD-ZIP_N 3.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3705g00006 K09338 - gmx:100819624 397.127