Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3705g00001 ATGGTATTGAGTGAACATAATTTAGTGAAACTTGAGTTTCTCATAAATATACCTTCTATTTATTACCTCTATTTCCAAACCATGCATTTTTTGCTTTACAATTTCCATCTTTTTATTTATGCTTTGCTTTTCATAGGCTCTGTTTTAGAATTGGAATCCGCATCGTCTACACCATCGCAGCTTCAGTTGGAAGCAAACGCTATAATCAATAGTGGATGGTGGAATTTGTCGCACTCAGATTCAAATCATATCTGTTCATGGATTGGTATACATTGCAATGATGCTGGAAGTGTAACTCGTATCACATATATGTATCATGAAGGGCCTATTCAATTGGCAACACTAAACCTCTCTGCTTTCAAGAACTTGGAACATCTTGAGGTCGTCGAATCTAGTCTAAACGGGACTATTCCATATGAAATTGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCCACAATTCTTTTCAAGATAAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCCACAATTCTCTTCAAGGTAAAATACCTCCATCACTAGGAAATCTTTCAGAACTCACTGATCTTGATTTATCCCACAATTCTCTTCAAGGTCAAATACCTTCATCACTTGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCCACAATTCTTTTCAAGATAAAATACCTCCATCACTAGGAAATCTTTCAAAACTCACTTATCTTGATTTATCCCACAATTCTCTTCAAGGTAAAATACCTCCATCACTAGGAAATCTTTCAGAACTCACTGATCTTGATTTATCCCACAATTCTCTTCAAGGTCAAATACCTTCATCACTAGGATTTCTAACCAATCTATTGACCCTAATAATCTCTAACAACAAAATCAATGGAACCTTTCCCATTTCACTTTCAAACATCATGCACCTTCAAAATATTGACATTTCACACAATCTACTAACCGGTTCCCTTGAACCTTTCTTAGTTGGACATTTTCCATTCTTGTATGGTCTGGATCTAAGCTACAATTGTCTTTCCGGAGCGATTCCTATGCCTCTTGATAGTATCTATGACATGAACCTTTCCTTCAATAATTTGAGTGGTCCTATTCCAAGTGGTGTAAATCCATATGCGCTAATTGGGAACAAGGATGTATGCAGCACCAATACAAATATACAAATGGAATACCAATTTCAGCCTTGTTCAGTCAACCAGAAGAAACGAAGGCAGCTGGTCATAATTCTTTCCATCACCATATTTCTAATCATGGCCTTCTTACTACTTTTATATCTGAGGTACAGCCGCATTGCAATCAAGAAAAAACAAGCAAAGATAACTGAAACATCTAAGAATGGGGACATGTTCTGCATATGGAACTACGACGGAAGCATAGCCTACGAAGACATCATTACAGTAACTGAAGACTTTGATCTTAAATATTGTATCGGAACAGGTGCGTATGGAAGTGTCTACAAGGCTCAATTACCAAGTGGAAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAATCAGAGGTCCCCACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGGAAATAAAGCACCGACATATAGTCAAGCTCCATGGATTCTGCTTGCACAAAAGAATAATGTTTTTGATTTATGAGTACATGGAGAAAGGAAGCTTGCTTTCTGTGTTGCTTTATGACATGGAAGCAATAGAATTTGACTGGAAAAAGAGGGTTAACACAGTGAAAGGAACTGCACATGCTCTCTCATATCTCCATCATGATTGTGTCCCTCCAATAGTGCATAGAGACATATCAGCAAGCAACGTCTTGCTTAACTCCAAGTGGGAGCCCATTGTTTCCGACTTTGGCACTGCCCGATTTCTAAACTTTGATTCATCCAATCGAACTATAGTTGCTGGAACCATTGGATACATAGCACCTGAGCTTGCGTATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGGCATTGGAGACTTTGATGGGAAAACATCCTAAGGAAATACTCTTATCACTTCAATCAACTTCTACTCACGATGACATCAAATTATGTGAAATATTGGATCAACGCCTCCCACACCCAACATTTTCAATTTTACAAGACATAGTTGTTGTTGCCATTGTGACTCTTGCATGCTTAAATCCCAACCCTTGCTCTCGTCCAACAATGAAACACATCTCTCAATGTTTCCTTAGTCAGTTCACACCACTAAGCATTCCTTTACATCATATTTCGTTGCAACAACTCATGAGTCAAGAACTCAGACACTCCTTGAAATTGTGA 2337 0.3766 MVLSEHNLVKLEFLINIPSIYYLYFQTMHFLLYNFHLFIYALLFIGSVLELESASSTPSQLQLEANAIINSGWWNLSHSDSNHICSWIGIHCNDAGSVTRITYMYHEGPIQLATLNLSAFKNLEHLEVVESSLNGTIPYEIGNLSKLTYLDLSHNSFQDKIPPSLGNLSKLTYLDLSHNSLQGKIPPSLGNLSELTDLDLSHNSLQGQIPSSLGNLSKLTYLDLSHNSFQDKIPPSLGNLSKLTYLDLSHNSLQGKIPPSLGNLSELTDLDLSHNSLQGQIPSSLGFLTNLLTLIISNNKINGTFPISLSNIMHLQNIDISHNLLTGSLEPFLVGHFPFLYGLDLSYNCLSGAIPMPLDSIYDMNLSFNNLSGPIPSGVNPYALIGNKDVCSTNTNIQMEYQFQPCSVNQKKRRQLVIILSITIFLIMAFLLLLYLRYSRIAIKKKQAKITETSKNGDMFCIWNYDGSIAYEDIITVTEDFDLKYCIGTGAYGSVYKAQLPSGKIVAVKKLHGFESEVPTFDESFRNEAKVLSEIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLLSVLLYDMEAIEFDWKKRVNTVKGTAHALSYLHHDCVPPIVHRDISASNVLLNSKWEPIVSDFGTARFLNFDSSNRTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKEILLSLQSTSTHDDIKLCEILDQRLPHPTFSILQDIVVVAIVTLACLNPNPCSRPTMKHISQCFLSQFTPLSIPLHHISLQQLMSQELRHSLKL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3705g00001 778 Gene3D Ribonuclease Inhibitor 209 308 IPR032675 -
Vium3705g00001 778 Gene3D Ribonuclease Inhibitor 57 208 IPR032675 -
Vium3705g00001 778 Pfam Protein kinase domain 486 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3705g00001 778 FunFam MDIS1-interacting receptor like kinase 2 560 754 - -
Vium3705g00001 778 SMART LRR_sd22_2 240 266 - -
Vium3705g00001 778 SMART LRR_sd22_2 192 218 - -
Vium3705g00001 778 SMART LRR_sd22_2 288 314 - -
Vium3705g00001 778 SMART LRR_sd22_2 144 170 - -
Vium3705g00001 778 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Vium3705g00001 778 Pfam Leucine rich repeat 237 277 IPR001611 GO:0005515
Vium3705g00001 778 Pfam Leucine rich repeat 189 228 IPR001611 GO:0005515
Vium3705g00001 778 ProSiteProfiles Protein kinase domain profile. 481 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3705g00001 778 SUPERFAMILY L domain-like 75 375 - -
Vium3705g00001 778 FunFam Nuclear pore complex protein NUP107 58 199 - -
Vium3705g00001 778 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 205 402 - -
Vium3705g00001 778 ProSitePatterns Protein kinases ATP-binding region signature. 487 510 IPR017441 GO:0005524
Vium3705g00001 778 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 155 749 - -
Vium3705g00001 778 SUPERFAMILY Protein kinase-like (PK-like) 460 746 IPR011009 -
Vium3705g00001 778 ProSitePatterns Tyrosine protein kinases specific active-site signature. 605 617 IPR008266 GO:0004672|GO:0006468
Vium3705g00001 778 PRINTS Leucine-rich repeat signature 171 184 - -
Vium3705g00001 778 PRINTS Leucine-rich repeat signature 240 253 - -
Vium3705g00001 778 Gene3D Ribonuclease Inhibitor 313 393 IPR032675 -
Vium3705g00001 778 SMART LRR_typ_2 192 215 IPR003591 -
Vium3705g00001 778 SMART LRR_typ_2 168 191 IPR003591 -
Vium3705g00001 778 SMART LRR_typ_2 144 167 IPR003591 -
Vium3705g00001 778 SMART LRR_typ_2 264 288 IPR003591 -
Vium3705g00001 778 SMART LRR_typ_2 240 263 IPR003591 -
Vium3705g00001 778 SMART LRR_typ_2 216 239 IPR003591 -
Vium3705g00001 778 Gene3D Phosphorylase Kinase; domain 1 440 559 - -
Vium3705g00001 778 FunFam Leucine-rich repeat protein kinase family protein 444 559 - -
Vium3705g00001 778 Gene3D Transferase(Phosphotransferase) domain 1 560 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3705g00001 Vium-Chr3705 13012 19116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3705g00001 67 653 Receptor kinase-like Gene Family AT4G08850 38.023 1.80e-119 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium3705g00001 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3705g00001 - - vum:124835364 1530.77