Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3703g00010 ATGGGAAAGCCAAGAGGAGGAGAAGCTGCTCTTTGTTTTGTGGTTTTCTTCTGGTTTTGGAGCTCTTCCCATGCTTTGCTCTCTCCAAAGGGAGTAAACTTTGAAGTGCAAGCTTTAATCGGGATAAAAGCTTTTCTTGTGGATCCCCATGGTATTCTAGATAATTGGGATGCGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACGTGTTCCCCTGACAATCTTGTTGTTAGCCTGGGCATTCCCAGCCAAAATTTATCTGGTATTCTATCTCCAAGCATAGGAAACCTGACATATCTTCAGACTGTGGTGCTACAAAATAACAACATAACTGGTTCAATCCCTTCAGAGATAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAGATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAGTACTTGAGGCTCAATAATAACAGTTTTGATGGAGAATGCCCAGTGTCACTAGCTAACATGGCGCAGCTTGCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGCCCTATACCTAGAATTTTGGCCAAATCCTTCAGTATTGTAGGAAACCCCTTAGTCTGCACCACAGGAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCCATGTCGATGAACTTGAACAGTTCTGAGAATGCTTTACCATATGGTAGAACAAAGGCTCACAAAATGGCCATTGCCTTTGGTCTGAGTCTTGGATTCCTCTGCTTGGTAGCTTTTGGTCTTGGACTTATTCTATTGAGGAGGTACAAGCGTAAACAAAAGTCATTCTTTGATGTTAAAGACCATCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAACTACGTGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATCCTCGGCAAGGGTGGTTTTGGACATGTCTACAAGGGAATTCTCCCAGATGGCACTCTTGTAGCAGTGAAGAGGCTTAAAGATGGCAATGCAACTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATAAGCTTGGCGGTGCACCGTAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGATTGGGGCACAAGGAAGCAGATTGCCATAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCAAACATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGGGATTTTGGGTTGGCTAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTGAGGGGAACAGTGGGGCATATAGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACCGACGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATTACTGGCCAGAGGGCACTGGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTACGGAAAATCCATCAAGAGAAGAAGCTTGAGTTGCTTGTGGACAAGGATCTGATGAGCAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCTGGCCACAGGCCTAGAATGTCAGAAGTTGTACGCATGCTTGAAGGTGATGGTCTTGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACAACAGCAAATGCAACAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTGGTCCAAGCAATGGAACTCTCAGGCCCCAGGTGA 1881 0.4428 MGKPRGGEAALCFVVFFWFWSSSHALLSPKGVNFEVQALIGIKAFLVDPHGILDNWDADAVDPCSWNMVTCSPDNLVVSLGIPSQNLSGILSPSIGNLTYLQTVVLQNNNITGSIPSEIGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRILAKSFSIVGNPLVCTTGKEKNCHGMTLMPMSMNLNSSENALPYGRTKAHKMAIAFGLSLGFLCLVAFGLGLILLRRYKRKQKSFFDVKDHHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGHVYKGILPDGTLVAVKRLKDGNATGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLMSNYDRIELEEIVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAEKWEASQSADNSKCNKPHELSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3703g00010 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 585 - -
Vium3703g00010 626 Pfam Protein kinase domain 306 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3703g00010 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 214 - -
Vium3703g00010 626 SMART serkin_6 305 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3703g00010 626 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Vium3703g00010 626 FunFam Somatic embryogenesis receptor-like kinase 1 382 594 - -
Vium3703g00010 626 SUPERFAMILY L domain-like 35 307 - -
Vium3703g00010 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vium3703g00010 626 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3703g00010 626 SUPERFAMILY Protein kinase-like (PK-like) 281 575 IPR011009 -
Vium3703g00010 626 MobiDBLite consensus disorder prediction 585 612 - -
Vium3703g00010 626 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vium3703g00010 626 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Vium3703g00010 626 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Vium3703g00010 626 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Vium3703g00010 626 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Vium3703g00010 626 Pfam Leucine Rich repeats (2 copies) 101 140 IPR025875 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3703g00010 Vium-Chr3703 136423 141017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3703g00010 11 626 Receptor kinase-like Gene Family AT5G16000 77.368 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium3703g00010 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3703g00010 - - gmx:100806650 1122.46