Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3703g00007 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTACTTCGTGTGATGCTGACATTCACTCAGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTTGGGTCCCCTCTTGGTGGAACCAGATCACGAACCGGAACATGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAAGTTTTCGATGAGTACGATGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACCAAGAGGAGGATAATGGTTTTTTGTACGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTCACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATTGCAGCACTTTCAACCGGGTTTGGAATTTGACTCGTCAAAAGCTGGGTTCAGTTACGATGGTTCTATTAGCCAAAGCGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAGATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACCAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCACATCACTCTTCAATGAAGTTGGAGGAACCATTTTCCCATCTTTCTAG 1071 0.4837 MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCTSCDADIHSANPLASRHHRVPILPILGPLLVEPDHEPEHGFVNEVEEEEEEVFDEYDDEIEAASWLLPHPVKGNQEEDNGFLYGDEYLDNLVDCNSCGHHNQFSNVFQQQQNYNTVPQNYAVVPVQVLQQLQHFQPGLEFDSSKAGFSYDGSISQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTSLFNEVGGTIFPSF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3703g00007 356 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vium3703g00007 356 SMART bboxneu5 63 105 IPR000315 GO:0008270
Vium3703g00007 356 CDD Bbox1_BBX-like 19 62 - -
Vium3703g00007 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 342 IPR045281 GO:0009909
Vium3703g00007 356 Pfam CCT motif 287 329 IPR010402 GO:0005515
Vium3703g00007 356 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Vium3703g00007 356 ProSiteProfiles CCT domain profile. 287 329 IPR010402 GO:0005515
Vium3703g00007 356 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vium3703g00007 356 CDD Bbox1_BBX-like 62 105 - -
Vium3703g00007 356 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3703g00007 Vium-Chr3703 119615 121842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3703g00007 1 356 C2C2-CO-like Transcription Factor Family AT3G02380 54.667 2.38e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium3703g00007 zf-B_box 4.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3703g00007 K12135 - gmx:100782635 536.954