Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3703g00005 ATGACAATGCCCTTTCTTACAAAGTTTAACAGTATAGAGATGCTTCTCAATGCATCGAGCTCTGTTAGTGCATCCAATAAAAGATGGCACTCTGCATTCATGGCCATCTATTGCTCCCGAGCTATCATGTCACTCTCCGCTCGAAACAAAACATACAAAATCAAAGAAAAAGTCTCACCTACACCAACACCACCGCCATATTTCGTCATGGTTGATTTCAGCCCTCACCGTTCCTTTGGTATTGATCAAACAGTCCTCACGGATATTGTCAAAGATAAAGACCTTCAGAGCCTTGATACATTTGGTGGAGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACCTCGAGTATGGTATCAAAGGTGCTGGTGGTGGTGATGAAGACATCACACGTAGAACACACGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGGTTCTTCCACTTTGTGGTGGAAGCCTTTAAGGATGTCACCATTCTCATCCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAACATGGAATCAAAGAAGGTTGGTACGATGGTGGAAGCATATTCGTTGCAGTGTTCATTGTGGTTTCCTTGTCAGCAGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCCCAGGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGGAGGCGTCAGCATTTGTCAATCTTTGAAATAGTTGTCGGTGATGTCATTTGCTTGAAGATTGGGGATCAAGTGCCAGCAGATGGGTTGTTCATTGAAGGGCATTCACTTAGAGTGGATGAATCAAGTATGACAGGAGAGAGTGATCATGTTGAGATCAGTAGACAGCACCCTTTCTTGTTCTCAGGCACCAAGGTGGCTGATGGGTATGCGAAGATGCTCGTTACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGTTCGATAAGCCGGGATAATGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTAACATCGTCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGCTGGTTAGGTACTTCACAGGGAATACGAAGGATGACCATGGGGTCAGAGAGTACAATGGAAGCAAGACCAAGTTTGATGACATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCATTGGCTGTGACGCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCAGCATGTGAGACAATGGGTTCTGCCACCACAATTTGTACAGATAAGACTGGGACTCTCACACTCAATGAGATGAAAGTAACCAAGTTCTGGATTGGCCAAGAACCCGTGGCAGAAACTGAAAATGTCAACTCAAAGGTTGCTCCAGTTGCTCTTCAACTTATCCAAGAAGGGGTGGCTCTAAACACAACTGGTAGTGTGCACAAATCCAATAAATCAGGTTCTGAATTTGAGTTTTCAGGCAGTCCCACAGAAAAAGCCATCCTATCCTGGGCAGTTTTGGAATTGAACATGGAGACGGAGCACTTGACAAAAAGCTGTTCCATCATTCAGGTTGAGACCTTCAACTCAAAGAAGAAAAAAAGCGGAGTTTTGTTGAGAAGGAAGGCAGACAACACAGTTAATGCTCACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGCTCAAGATACTATGATGCTTCTGGTACTGTGAAAGATCTTGACATTGATACAATGTTGAAGTTTGAACACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTACCTGAGGAAGAGCTTGGAGATGAAAACACAACGGGGAAAGTGAAAGACAGTGGTTTAACATTGTTAGGGGTGGTTGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAAGGCTGTGGAAGCTTGCCAAAAGGCTGGTGTGAACGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAGGGCTATAGCAAGCGAATGTGGGATACTCCGGCCAAATCAGGACACAGCTGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGCTGGAGAAGGTGGAAAAAATCTGTGTGATGGCCAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGTCTGAAGCAGAAAGGCCATGTAGTTGCTGTTACCGGGGATGGCACAAATGACGCACCAGCACTGAAAGAAGCTGACATTGGACTCTCTATGGGAATTCAAGGTACTGAAGTGGCCAAAGAGAGCTCAGACATTGTTATTTTGGATGACAATTTTGCATCTGTGGTGACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATACAGAAGTTCATTCAGTTTCAGTTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTGGCAGCAGTATCAGCAGGGGAAGTGCCACTCACAGCAGTACAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCACTTGCAACAGAAAAGCCCACCAATGAATTGATGGACAAACCACCAGTTGGTAGAACAAAACCT 2646 0.446 MTMPFLTKFNSIEMLLNASSSVSASNKRWHSAFMAIYCSRAIMSLSARNKTYKIKEKVSPTPTPPPYFVMVDFSPHRSFGIDQTVLTDIVKDKDLQSLDTFGGVEGVATALETHLEYGIKGAGGGDEDITRRTHVFGSNTYHKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVVSLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHLSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEISRQHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDNDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDDHGVREYNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWIGQEPVAETENVNSKVAPVALQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMETEHLTKSCSIIQVETFNSKKKKSGVLLRRKADNTVNAHWKGAAEMVLKMCSRYYDASGTVKDLDIDTMLKFEHIIQGMAASSLRCIAFAHVEVPEEELGDENTTGKVKDSGLTLLGVVGIKDPCRPGVKKAVEACQKAGVNVKMITGDNVFTARAIASECGILRPNQDTAGAVIEGEEFRNYTPEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKP 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3703g00005 882 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Vium3703g00005 882 Gene3D - 457 656 IPR023299 GO:0000166
Vium3703g00005 882 FunFam Calcium-transporting ATPase 199 323 - -
Vium3703g00005 882 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00005 882 PRINTS H+-transporting ATPase (proton pump) signature 604 622 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00005 882 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00005 882 NCBIfam HAD-IC family P-type ATPase 390 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00005 882 NCBIfam HAD-IC family P-type ATPase 728 836 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00005 882 CDD P-type_ATPase_Ca_PMCA-like 129 882 - -
Vium3703g00005 882 SFLD C1.7: P-type atpase like 429 808 - -
Vium3703g00005 882 Gene3D - 155 879 - -
Vium3703g00005 882 Gene3D - 126 323 - -
Vium3703g00005 882 SMART Cation_ATPase_N_a_2 94 177 IPR004014 -
Vium3703g00005 882 Pfam haloacid dehalogenase-like hydrolase 444 769 - -
Vium3703g00005 882 Pfam E1-E2 ATPase 225 425 - -
Vium3703g00005 882 SUPERFAMILY HAD-like 445 860 IPR036412 -
Vium3703g00005 882 Gene3D - 444 800 IPR023214 -
Vium3703g00005 882 SUPERFAMILY Calcium ATPase, transmembrane domain M 102 880 IPR023298 -
Vium3703g00005 882 FunFam Calcium-transporting ATPase 457 656 - -
Vium3703g00005 882 NCBIfam calcium-translocating P-type ATPase, PMCA-type 94 882 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium3703g00005 882 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 453 661 IPR023299 GO:0000166
Vium3703g00005 882 SUPERFAMILY Calcium ATPase, transduction domain A 225 321 IPR008250 -
Vium3703g00005 882 FunFam Calcium-transporting ATPase 650 800 - -
Vium3703g00005 882 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Vium3703g00005 882 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Vium3703g00005 882 PRINTS P-type cation-transporting ATPase superfamily signature 271 285 - -
Vium3703g00005 882 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Vium3703g00005 882 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Vium3703g00005 882 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Vium3703g00005 882 PANTHER CATION TRANSPORTING ATPASE 66 882 - -
Vium3703g00005 882 Pfam Cation transporter/ATPase, N-terminus 102 172 IPR004014 -
Vium3703g00005 882 SFLD p-type atpase 429 808 IPR044492 -
Vium3703g00005 882 Pfam Cation transporting ATPase, C-terminus 840 881 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3703g00005 Vium-Chr3703 17070 19984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3703g00005 12 882 Primary Pumps ATPases AT3G22910 68.229 0.0 1126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3703g00005 K01537 - gmx:100793918 1464.13