Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3703g00004 ATGACAATGCCCTTTCTTACTAAGTTTAACAGTATAGAGATGCTTCTCAATGCATCGATCTCTGTTAGTGCATCCAATAAAAGATGGCACTCTGCATTCATGGCCATCTATTGCTCCCGAGCTATCATGTCACTCTCCGCTCGAAACAAAACATACAAAATCAAAGAAAAAGTCTCACCTACACCAACACCACCGCCATATTTCGTCATGGTTGATTTCAGCCCTCACCGTTCCTTTGGTATTGATCAAACAGTCCTCACGGATATTGTCAAAGATAAAGACCTTCAGAGCCTTGATACATTTGGTGGAGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACCTCGAGTATGGTATCAAAGGTGCTGGTGGTGGTGATGAAGACATCACACGTAGAACACACGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGGTTCTTCCACTTTGTGGTGGAAGCCTTTAAGGATGTCACCATTCTCATCCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAACATGGAATCAAAGAAGGTTGGTACGATGGTGGAAGCATTTTCGTTGCAGTGTTCATTGTGGTTTCCTTGTCAGCAGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCCCAGGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGGAGGCGTCAGCATTTGTCAATCTTTGAAATAGTTGTCGGTGATGTCATTTGCTTGAAGATTGGGGATCAAGTGCCAGCAGATGGGTTGTTCATTGAAGGGCATTCACTTAGAGTGGATGAATCAAGTATGACAGGAGAGAGTGATCATGTTGAGATCAGTAGACAGCACCCTTTTTTGTTCTCAGGCACCAAGGTGGCTGATGGGTATGCGAAGATGCTCGTTACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGTTCGATAAGCCGGGATAATGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTAACATCGTCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGCTGGTTAGGTACTTCACAGGGAATACGAAGGATGACCATGGGGTCAGAGAGTACAATGGAAGCAAGACCAAGTTTGATGACATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCATTGGCTGTGACGCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCAGCATGTGAGACAATGGGTTCTGCCACCACAATTTGTACAGATAAGACTGGGACTCTCACACTCAATGAGATGAAAGTAACCAAGTTCTGGATTGGCCAAGAACCCGTGGCAGAAACTGAAAATGTCAACTCAAAGGTTGCTCCAGTTGCTCTTCAACTTATCCAAGAAGGGGTGGCTCTAAACACAACTGGTAGTGTGCACAAATCCAATAAATCAGGTTCTGAATTTGAGTTTTCAGGCAGTCCCACAGAAAAAGCCATCCTATCCTGGGCAGTTTTGGAATTGAACATGGAGACGGAGCACTTGACAAAAAGCTGTTCCATCATTCAGGTTGATACCTTCAACTCAAAGAAGAAAAAAAGCGGAGTTTTGTTGAGAAGGAAGGCAGACAACACAGTTAATGCTCACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGCTCAAGATACTATGATGCTTCTGGTACTGTGAAAGATCTTGACATTGATACAATGTTGAAGTTTGAACACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTACCTGAGGAAGAGCTTGGAGATGAAAACACAACGGGGAAAGTGAAAGACTGTGGTTTAACATTGTTAGGGGTGGTTGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAAGGCTGTGGAAGCTTGCCAAAAGGCTGGTGTGAACGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAGGGCTATAGCAAGCGAATGTGGGATACTCCGGCCAAATCAGGACACAGCTGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGCTGGAGAAGGTGGAAAAAATCTGTGTGATGGCCAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGTCTGAAGCAGAAAGGCCATGTAGTTGCTGTTACTGGGGATGGCACAAATGACGCACCAGCACTGAAAGAAGCTGACATTGGACTCTCTATGGGAATTCAAGGTACTGAAGTGGCCAAAGAGAGCTCAGACATTGTTATTTTGGATGACAATTTTGCATCTGTGGTGACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATACAGAAGTTCATTCAGTTTCAGTTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTGGCAGCAGTATCAGCAGGGGAAGTGCCACTCACAGCAGTACAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCACTTGCAACAGAAAAGCCCACCAATGAATTGATGGACAAACCACCAGTTGGTAGAACAAAACCTCTAATCACCAATGTCATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTAAATGACACATTGATTTTCAACACGTTTGTTCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTATTCAAAGGCATACACAGGAGCAAGTTGTTTTTAGGCATCATTGCCATAACAATAATCCTTCAGGTTGTTATGGTTGAGTTTCTAAAGAAGTTTGCTGACACAGAGAGGCTAAATTGGGGGCAATGGGCTATCTGCATTGGTCTAGCTGCAGTTTCCTGGCCAATAGGTTGGGTTGTGAAGTTGATACCTGTCCCAGAGAAACCGTTTCTCAGTTTTTTGAGAATCAAGAAATGA 3078 0.4399 MTMPFLTKFNSIEMLLNASISVSASNKRWHSAFMAIYCSRAIMSLSARNKTYKIKEKVSPTPTPPPYFVMVDFSPHRSFGIDQTVLTDIVKDKDLQSLDTFGGVEGVATALETHLEYGIKGAGGGDEDITRRTHVFGSNTYHKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVVSLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHLSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEISRQHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDNDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDDHGVREYNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWIGQEPVAETENVNSKVAPVALQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMETEHLTKSCSIIQVDTFNSKKKKSGVLLRRKADNTVNAHWKGAAEMVLKMCSRYYDASGTVKDLDIDTMLKFEHIIQGMAASSLRCIAFAHVEVPEEELGDENTTGKVKDCGLTLLGVVGIKDPCRPGVKKAVEACQKAGVNVKMITGDNVFTARAIASECGILRPNQDTAGAVIEGEEFRNYTPEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIAITIILQVVMVEFLKKFADTERLNWGQWAICIGLAAVSWPIGWVVKLIPVPEKPFLSFLRIKK 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3703g00004 1025 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Vium3703g00004 1025 Gene3D - 444 800 IPR023214 -
Vium3703g00004 1025 FunFam Calcium-transporting ATPase 199 323 - -
Vium3703g00004 1025 SUPERFAMILY HAD-like 445 860 IPR036412 -
Vium3703g00004 1025 SMART Cation_ATPase_N_a_2 94 177 IPR004014 -
Vium3703g00004 1025 FunFam Calcium-transporting ATPase 457 656 - -
Vium3703g00004 1025 Pfam E1-E2 ATPase 225 425 - -
Vium3703g00004 1025 SFLD Haloacid Dehalogenase 429 808 - -
Vium3703g00004 1025 Gene3D - 155 1009 - -
Vium3703g00004 1025 PRINTS H+-transporting ATPase (proton pump) signature 604 622 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00004 1025 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00004 1025 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00004 1025 NCBIfam calcium-translocating P-type ATPase, PMCA-type 94 1012 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium3703g00004 1025 Pfam Cation transporting ATPase, C-terminus 840 1010 IPR006068 -
Vium3703g00004 1025 Gene3D - 126 323 - -
Vium3703g00004 1025 Pfam haloacid dehalogenase-like hydrolase 444 769 - -
Vium3703g00004 1025 Pfam Cation transporter/ATPase, N-terminus 102 172 IPR004014 -
Vium3703g00004 1025 SUPERFAMILY Calcium ATPase, transmembrane domain M 102 1012 IPR023298 -
Vium3703g00004 1025 FunFam Calcium-transporting ATPase 650 800 - -
Vium3703g00004 1025 FunFam Calcium-transporting ATPase 772 1014 - -
Vium3703g00004 1025 PRINTS P-type cation-transporting ATPase superfamily signature 271 285 - -
Vium3703g00004 1025 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Vium3703g00004 1025 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Vium3703g00004 1025 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Vium3703g00004 1025 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Vium3703g00004 1025 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Vium3703g00004 1025 NCBIfam HAD-IC family P-type ATPase 390 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00004 1025 NCBIfam HAD-IC family P-type ATPase 728 836 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3703g00004 1025 SUPERFAMILY Calcium ATPase, transduction domain A 225 321 IPR008250 -
Vium3703g00004 1025 Gene3D - 457 656 IPR023299 GO:0000166
Vium3703g00004 1025 CDD P-type_ATPase_Ca_PMCA-like 129 888 - -
Vium3703g00004 1025 SFLD p-type atpase 429 808 IPR044492 -
Vium3703g00004 1025 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 453 661 IPR023299 GO:0000166
Vium3703g00004 1025 PANTHER CATION TRANSPORTING ATPASE 70 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3703g00004 Vium-Chr3703 9889 13421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3703g00004 12 1025 Primary Pumps ATPases AT3G22910 68.762 0.0 1337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3703g00004 K01537 - gmx:100793918 1738.01