Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3703g00001 TGGTCTCAGATTGCTGCACGGCTTCCTGGTCGCACAGACAATGAAATAAAGAATTTCTGGAACTCAACACTGAAGAAAAGGTTGAAAATGAGCAGCAGCAACATCAACAACACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATAATGCCAATGAATGATCAGCATGACCTCATGACCATGTGCATGGACTCCTCATCATCAACATCATCATCATCCATGCAATCCATGCAAGCCAACATGGCACTAACAGACCAATTTGACCCCTTTCCTTTGTTGTCCAACCGCTATGACATGACCACCGGTGCAGCCGGTTTCCTTGACAACATGGCTGCATGCTTAAACCAAGTTAGTATGGTAGATCATGATGATGGGGTTGTTCATGGAGGTTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGAGAATTCTAGTAACCCAATTGATGTGAAAAGCCATAACAACAACCACTTGAAGAACAGTTGCTTCAGTAACACTGATCATCACCATCACCATCATCATCATCATAATTTTCAAACCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGTTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAAGTTTAA 744 0.4301 WSQIAARLPGRTDNEIKNFWNSTLKKRLKMSSSNINNTSSPNNSDSSDPRDVMGGIMPMNDQHDLMTMCMDSSSSTSSSSMQSMQANMALTDQFDPFPLLSNRYDMTTGAAGFLDNMAACLNQVSMVDHDDGVVHGGYGALEPNKMGLESDFSLPPLESRSIEENSSNPIDVKSHNNNHLKNSCFSNTDHHHHHHHHHNFQTSNNVVVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3703g00001 247 PANTHER MYB DOMAIN PROTEIN 55 1 198 - -
Vium3703g00001 247 ProSiteProfiles Myb-like domain profile. 1 24 IPR001005 -
Vium3703g00001 247 Gene3D - 1 52 - -
Vium3703g00001 247 MobiDBLite consensus disorder prediction 30 56 - -
Vium3703g00001 247 MobiDBLite consensus disorder prediction 30 49 - -
Vium3703g00001 247 CDD SANT 1 24 IPR001005 -
Vium3703g00001 247 SUPERFAMILY Homeodomain-like 1 33 IPR009057 -
Vium3703g00001 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 28 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3703g00001 Vium-Chr3703 262 1805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3703g00001 1 247 MYB Transcription Factor Family AT3G08500 35.206 6.95e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3703g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3703g00001 K09422 - gmx:100813660 346.28