Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium369g00002 ATGGCAGCTTTTTCATACCAGTACCATCCTTTTCTGGTTGATCCTGCATTCTTCCCCAGCAACATGAACACCCCTTCTTCTCCTTCTCCTCCCCAGTTTCACCTCCCTCAGGAAACATCTTTTAATCTCACAAACCAGGAGATTAGCTGTGTTGACCAAAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACAAAAATCCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAAACCGGTGAACAGGTCACTCAGAAGGTGAACACTCCGCCGTTGAAGAAAAGAAGAACCAGAAATGGATCTTCCTTGACTAGTAACACTCAATCCAAGGATACTGCAACAGAAGGAAGAAGCAAGAAACAAAGGAAGAACAATGGTGGGGTGAAAGAAGACAAGGCAAAAGAAGAGAAGAAGGAGCAGAGAAAATGTCATGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCGGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGCTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTATCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACTTGTCAACGGATCTAGATACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCACTACCATGTGTGTCACATTGCAACAGCCCCAACGAAGCCACAACTTTTGCTGATACAACCACCATTACCCCCACCAACATCTTTCACAATGCCACTGACTATCTTTTGGATAATTCAGCTTCATTTTTTCTTCAAGGCCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1029 0.45 MAAFSYQYHPFLVDPAFFPSNMNTPSSPSPPQFHLPQETSFNLTNQEISCVDQSSKITISDNEPSVTKILSPQSSVVVDKLETGEQVTQKVNTPPLKKRRTRNGSSLTSNTQSKDTATEGRSKKQRKNNGGVKEDKAKEEKKEQRKCHEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLSTDLDTLLVRPEKLNSMASPSPLPCVSHCNSPNEATTFADTTTITPTNIFHNATDYLLDNSASFFLQGQRSTMFSEEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium369g00002 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
Vium369g00002 342 MobiDBLite consensus disorder prediction 117 150 - -
Vium369g00002 342 Gene3D - 161 234 IPR036638 GO:0046983
Vium369g00002 342 CDD bHLH_AtBPE_like 154 239 - -
Vium369g00002 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 30 260 IPR024097 GO:0006355
Vium369g00002 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Vium369g00002 342 MobiDBLite consensus disorder prediction 86 150 - -
Vium369g00002 342 SMART finulus 170 220 IPR011598 GO:0046983
Vium369g00002 342 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Vium369g00002 342 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Vium369g00002 342 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium369g00002 Vium-Chr369 13030 15914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium369g00002 1 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 47.471 1.56e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium369g00002 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium369g00002 - - gmx:100806696 566.614