Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium369g00001 ATGGCAGCTTTTTCATACCAGTACCATCCTTTTCTGGTTGATCCTGCATTCTTCCCCAGCAACATGAACACCCCTTCTTCTCCTTCTCCTCCCCAGTTTCACCTCCCTCAGGAAACATCTTTTAATCTCACAAACCAGGAGATTAGCTGTGTTGACCAAAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACAAAAATCCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAAACCGGTGAACAGGTCACTCAGAAGGTGAACACTCCGCCGTTGAAGAAAAGAAGAACCAGAAATGGATCTTCCTTGACTAGTAACACTCAATCCAAGGATACTGCAACAGAAGGAAGAAGCAAGAAACAAAGGAAGAACAATGGTGGGGTGAAAGAAGACAAGGCAAAAGAAGAGAAGAAGGAGCAGAGAAAATGTCATGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCGGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGCTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGGTACCCTTAACGGATTCAATTGTTTTTCTGTTCTTATCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACTTGTCAACGGATCTAGATACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCACTACCATGTGTGTCACATTGCAACAGCCCCAACGAAGCCACAACTTTTGCTGATACAACCACCATTACCCCCACCAACATCTTTCACAATGCCACTGACTATCTTTTGGATAATTCAGCTTCATTTTTTCTTCAAGGCCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1059 0.4476 MAAFSYQYHPFLVDPAFFPSNMNTPSSPSPPQFHLPQETSFNLTNQEISCVDQSSKITISDNEPSVTKILSPQSSVVVDKLETGEQVTQKVNTPPLKKRRTRNGSSLTSNTQSKDTATEGRSKKQRKNNGGVKEDKAKEEKKEQRKCHEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEVPLTDSIVFLFLSMKLASVNPMFYDLSTDLDTLLVRPEKLNSMASPSPLPCVSHCNSPNEATTFADTTTITPTNIFHNATDYLLDNSASFFLQGQRSTMFSEEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium369g00001 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 30 270 IPR024097 GO:0006355
Vium369g00001 352 SMART finulus 170 220 IPR011598 GO:0046983
Vium369g00001 352 MobiDBLite consensus disorder prediction 117 150 - -
Vium369g00001 352 Gene3D - 161 224 IPR036638 GO:0046983
Vium369g00001 352 CDD bHLH_AtBPE_like 154 249 - -
Vium369g00001 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 221 IPR036638 GO:0046983
Vium369g00001 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Vium369g00001 352 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Vium369g00001 352 MobiDBLite consensus disorder prediction 86 150 - -
Vium369g00001 352 FunFam Basic helix-loop-helix transcription factor 161 243 - -
Vium369g00001 352 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium369g00001 Vium-Chr369 13030 15917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium369g00001 1 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.693 1.88e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium369g00001 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium369g00001 - - gmx:100806696 558.525