Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3699g00006 ATGGTTGAGCGAAAGCAGTTCAAGACGAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCCTTTGCGCATGGGAGTGCCGAGCTTCGACGATTCCCTGGCTCGTTTAGTGGTAGGAGAGACTATTTAGGCAATGACTTGAGGGATAAACTTGAAAGAAGGCATTTATCTCCTCGAAGGTACTCACCAGCTCAAGATGCAAGAGGCCGCCAGAGCATCCGTGAATACAGTCCTCCAAGGTCTTTGGAGAACAAAAGTGACAGAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATCAAGCTAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACACTTGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCAGTGCTCTACAGAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCGAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTAGAGTTCACAATCATATGTCACAGTTACAAGATGAACTGAAGAGATCTCAAGTCCGACTTCAACGGTTTGGAGATCAGCTTGTCTCGGATATTTCTAAAATTGGTGCCAATGAAGAAGATTTAAGCATTGATATTGTCAGCAATGGTGAAAATACTGGTCTTCTTCCAATTGTCAAACATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTGCATATTGAACGAGATGCTTTGGAAGATTTAAAACAAGGTAATAGATTAAAAGAGGGCCATTCGGTTGAGACAGGTAGAACTAAGAAGCGATCTCGGTGGAATACATCAGATCAATTGAATGATGAGTCTCTCAGGGTCCCAGAAAATGGAACTGAAGTTATTAGAGCTCTAGATCCTGAAGGCAGGCACAAGAGAGGAAATATGCAGTTGAAGCAACCTAGGATTGAAGTGCCATCAACTAGCATGGCAGCTCATGTGGCTGATGAGGACGTTGATATTGAACTTTACAACGGAAATGATATCAATGAAACTGCAAATACAGAAAATGAGAATGGAGTGGCATACAAGGTGAAGGCTGCACCGCTTATGCTTCCCCCAGCTTTGATACCTCGTAGCAATTATTCACAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGCTGA 1266 0.421 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFPGSFSGRRDYLGNDLRDKLERRHLSPRRYSPAQDARGRQSIREYSPPRSLENKSDRRHRRKQGITGQSDTSGNLKASDRVQDQAKERKMLSSGSRNTLEEQLKKVDSGISALQNRKFQLEVYLDESIQEVDSLNSRIQELEAQLCEEDEECKRITSRIRKFVRVHNHMSQLQDELKRSQVRLQRFGDQLVSDISKIGANEEDLSIDIVSNGENTGLLPIVKHNVEHNDASSHRKRLHIERDALEDLKQGNRLKEGHSVETGRTKKRSRWNTSDQLNDESLRVPENGTEVIRALDPEGRHKRGNMQLKQPRIEVPSTSMAAHVADEDVDIELYNGNDINETANTENENGVAYKVKAAPLMLPPALIPRSNYSQYEGNDENVDVDG 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3699g00006 421 Gene3D - 1 36 - -
Vium3699g00006 421 MobiDBLite consensus disorder prediction 116 130 - -
Vium3699g00006 421 MobiDBLite consensus disorder prediction 85 101 - -
Vium3699g00006 421 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Vium3699g00006 421 MobiDBLite consensus disorder prediction 284 308 - -
Vium3699g00006 421 Coils Coil 160 187 - -
Vium3699g00006 421 Coils Coil 132 152 - -
Vium3699g00006 421 MobiDBLite consensus disorder prediction 58 136 - -
Vium3699g00006 421 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 420 IPR045868 GO:0046872
Vium3699g00006 421 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3699g00006 Vium-Chr3699 85079 95627 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium3699g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3699g00006 - - gmx:100811131 693.345