Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3690g00004 ATGGATGGTGGTAACATCAATTCAAGTGAACACATTGATACAACTTCTACCAAAATCTTTGTTGGAGGTTTAGCTTGGGAAACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATTTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCTGAGGTAGCAATGAAAGCAGTTCAAAACCCATATCCAATAATTGATGGACGGAAGACAAATTGCAACATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAACATGCAGATATATTCAACCTTCACATGACATGA 348 0.3937 MDGGNINSSEHIDTTSTKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEVAMKAVQNPYPIIDGRKTNCNIASIGANKNRRQAPQHADIFNLHMT 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3690g00004 115 SMART rrm1_1 18 90 IPR000504 GO:0003723
Vium3690g00004 115 Gene3D - 5 107 IPR012677 -
Vium3690g00004 115 PANTHER BOULE-RELATED 11 104 - -
Vium3690g00004 115 SUPERFAMILY RNA-binding domain, RBD 10 93 IPR035979 GO:0003676
Vium3690g00004 115 CDD RRM_RBM24_RBM38_like 17 92 - -
Vium3690g00004 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Vium3690g00004 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3690g00004 Vium-Chr3690 6247 8177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3690g00004 13 93 C2H2 Transcription Factor Family AT2G19380 41.975 1.50e-16 72.0