Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3690g00003 ATGGATGGTGGTAACATCAATTCAAGTGAACACATTGATACAACTTCTACCAAAATCTTTGTTGGAGGTTTAGCTTGGGAAACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATTTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCTGAGGTAGCAATGAAAGCAGTTCAAAACCCATATCCAATAATTGATGGACGGAAGACAAATTGCAACATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAACATGATATATTCAACCTTCACATGACATGA 345 0.3913 MDGGNINSSEHIDTTSTKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEVAMKAVQNPYPIIDGRKTNCNIASIGANKNRRQAPQHDIFNLHMT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3690g00003 114 SMART rrm1_1 18 90 IPR000504 GO:0003723
Vium3690g00003 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Vium3690g00003 114 PANTHER BOULE-RELATED 11 102 - -
Vium3690g00003 114 CDD RRM_RBM24_RBM38_like 17 92 - -
Vium3690g00003 114 Gene3D - 5 107 IPR012677 -
Vium3690g00003 114 SUPERFAMILY RNA-binding domain, RBD 10 93 IPR035979 GO:0003676
Vium3690g00003 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3690g00003 Vium-Chr3690 6247 8177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3690g00003 13 114 C2H2 Transcription Factor Family AT2G19380 36.275 3.01e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3690g00003 - - vum:124835324 232.261