Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium368g00001 ATGGATTTCGAAGAACATGATGAAGCTCAGTTGGGGATGCCTGGACCCACATATGATCACTCGCCGTTCAACCCCTGCCGAGTCAAAATGCCAACTCACATCGTCCAGGAAGACCCTCTGCCTCCTGCGGCCACTCCACCACCCACCATCAGCCGAAACAACGCCAGGGGAAAATACAAAGAGTGCCTCAAGAACCACGCCGTGGGAATCGGCGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGGCGGCGGGAGCCGAGGGTACCCTGGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCTTCGGAGAGCTCCTTCCTAATGCCCTTCCAGCACCGCCGCCACCAGCCGCCGCCACAGTTCGCGGCGGCCTACTACAGGGCCCCGGCGGGCTACTTGCAGGTGGCGGGGCCGCATCGTGGAGGCCTTGCCACGCTGGCACTCCCCTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTCTGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAAAAACACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGGTGTTCAACGGCATGTCCTCAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAG 756 0.5966 MDFEEHDEAQLGMPGPTYDHSPFNPCRVKMPTHIVQEDPLPPAATPPPTISRNNARGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPSESSFLMPFQHRRHQPPPQFAAAYYRAPAGYLQVAGPHRGGLATLALPSTSGAGGGAQSPREDQEDVSDPSGGGSGSNKKRFRTKFTLEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTGVQRHVLKVWMHNNKHTLGKKP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium368g00001 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Vium368g00001 251 MobiDBLite consensus disorder prediction 1 20 - -
Vium368g00001 251 SUPERFAMILY Homeodomain-like 178 249 IPR009057 -
Vium368g00001 251 FunFam Zinc-finger homeodomain protein 2 175 249 - -
Vium368g00001 251 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 108 IPR006456 -
Vium368g00001 251 NCBIfam homeobox domain, ZF-HD class 188 244 IPR006455 -
Vium368g00001 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 247 - -
Vium368g00001 251 Gene3D - 173 249 - -
Vium368g00001 251 MobiDBLite consensus disorder prediction 152 192 - -
Vium368g00001 251 Pfam ZF-HD protein dimerisation region 58 108 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium368g00001 Vium-Chr368 12931 14867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium368g00001 55 247 ZF-HD Transcription Factor Family AT4G24660 53.500 1.74e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium368g00001 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium368g00001 - - gmx:100798992 327.02