Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3684g00002 ATGTCGATCGCAGAAACTGCTTGTTCATACGCATCACTCATCCTTCATGATGAAGGAATCGCCGTCACTGCGGACAGTATTGCCACCTTGTTGAAAACTGCGAAGGTTCAAGTAGATTCTTTTTGGCCTACCTTGTTTGCTAAACTTGCCGAGAAGAAAAATCTTGGCGATTTGATAGCAAATGCCGCAGGCGGTGGGGCTCCAGTTGCTGTTGCAGCTGCCCCAGTTGCTGCTGCTGGGGGAGGTGCTGCCGCAGCCGCCCCTGCTGCTGAGGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGATGATGACATGGGATTCGGCTTGTTCGATTAG 339 0.5074 MSIAETACSYASLILHDEGIAVTADSIATLLKTAKVQVDSFWPTLFAKLAEKKNLGDLIANAAGGGAPVAVAAAPVAAAGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3684g00002 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Vium3684g00002 112 CDD Ribosomal_P1 5 111 - -
Vium3684g00002 112 MobiDBLite consensus disorder prediction 97 112 - -
Vium3684g00002 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Vium3684g00002 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vium3684g00002 112 MobiDBLite consensus disorder prediction 85 112 - -
Vium3684g00002 112 Gene3D - 1 62 IPR038716 -
Vium3684g00002 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3684g00002 Vium-Chr3684 20769 22072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3684g00002 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.386 2.28e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3684g00002 K02942 - gmx:100791962 133.265