Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3682g00006 ATGGAAAATGGAAATGAGAAGGATGAAGGGGAAGCAGTGAAAGAGGGTGAAATGGTGAAGAAGATAACAATAAAGTTAGTGTGTGGTAATGGGGAGGGTTCAAGAAGAGGGTCATCATCATCTTCTATTTTTTGTCAGGCAGATGAATGTGGTATGAACTTGAACATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGTGACAGACATTCTAAGGCTCCTGTTGTTTTACTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAATTTGATGAGACGAAAAGAAGTTGCAGGAAAACATTGGCTGAGCATAATGAACGTAGAAGAAAAAGTCGCACAGACATGTCCTTAGGAGGTGATTAA 387 0.4134 MENGNEKDEGEAVKEGEMVKKITIKLVCGNGEGSRRGSSSSSIFCQADECGMNLNMAKSYNRRHKVCDRHSKAPVVLLSSIRQRFCQQCSKFHELAEFDETKRSCRKTLAEHNERRRKSRTDMSLGGD 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3682g00006 128 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 120 IPR044817 GO:0003677
Vium3682g00006 128 SUPERFAMILY SBT domain 43 123 IPR036893 GO:0003677|GO:0005634
Vium3682g00006 128 MobiDBLite consensus disorder prediction 109 128 - -
Vium3682g00006 128 Gene3D - 36 106 IPR036893 GO:0003677|GO:0005634
Vium3682g00006 128 ProSiteProfiles Zinc finger SBP-type profile. 42 119 IPR004333 GO:0003677
Vium3682g00006 128 Pfam SBP domain 45 118 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3682g00006 Vium-Chr3682 66911 68140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3682g00006 38 122 SBP-box Gene Family AT2G33810 61.176 1.43e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium3682g00006 SBP 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3682g00006 - - vum:124835315 247.284