Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3680g00002 ATGAAGGTGGAAATTGAAGGCAGCCAGAGTGACTCTGCAGAATCTCAGGGAGTGTCTGGAACAGATGAATCTGTTTCCGGGCAATCAGAAAATAGAAGACTGGAATCCAAGAAGAAACTGAAGAAAGTGAGGTCAATAAGGCTTGTAAGGTTGCCAAGCAAGAGATCATCCGTTAGAGGGAGACCCCAATATGATCATCTCTCCATTCTCTCATCAGTTAGCACAGAAAATTTAGAGGGGCTAACACCACTTGGTATGGCAGATGCATCACCCCATTACATGAAGGGTACCAGTAGTTCTCATGCAAAGGATAGTGTTCAGAATACAGAAAGACTATTGTTCACAAAGAAGACTTTGGGAAGAATGACTACTTTGAAACTGAAGAGGAGTCTGACTAGAAAAGTATCTGGTAGGACCGAACCAAAGAGGAAAGTGAAGTCGTCTAGATCAATCATGCTTGTAACGGTCAAGGGCCAAAAGTTATCTGAATCTAGTTATGGCAGTGGTGACCAGAATTGGATAAGTGCAAGTGATGCTGCTGATAACAAAACCCAGAGAGTCATTACCAGAAGATTAAGCTTGAAGCCTGTGAGGATCTTAGCAAAGATTCCCACTTTCAAATCAAAGAATTCTTCCATGGAGAGTGGCCAATCCCCAGACACAAGCTTGCTTAGAGCCACTTGCTCTTCTGCTCTGAAGGATTCCCATTTTCCTGATCACATTGGCTTCCCTCAAGAGGAAAGTGACTCTCAAGGAGTATCAGCTGTTGCCAAGGTTTGTCCATATTCTTACTGCTCACTTCATGGTCACCGCCATGGGAATCTGCCTCCATTGAAGCGCTTTGTGTCAATGAGGAGGCGCAAGTCGAAGAGCCAGAAGCCAACGAAAATGGATAATCAACCTGTTACTAGATCAAATCAGTTTGGTAATGCAAAGAAAGGTACTCGTAAAACTCAAACTGTCCACAGTGAAGGTGGCAAATCTCATTTTCAGAACAAGAAAAAGCTGGCAAGGGACTCATGTATTAGGCCTCATGATACTCCAGAATCCACAGTTACTGAAAGTGTAGAACCAGTATCAACAGATGGAGTTCAGTTTTCTGCTCCTGATATTGAGATGTTGGAGGGAGAAGTAACCAACACAGGCAAAAATATGGAGCCAGACAATGAAGTACTTGAGGTGAGTTCTGTACCGAAAGAGTCTACAGATGCTAGCACTACTGATATGGCCTGTAGAATGAAAGAAAGAGATAAAAAGCACATCAACATGTGGCACTTGGTGTACAAACATACTGTACTAAGTAACACAGGGAAATGTGAAAACAAGCCGCCCTTTGATGGAGGGAACAAGGAAGGAAGAGAGCAAGGTTTCCTTACAACTAATGAAGTAAACAACTCTAATTGTCGAGATGATTGTGATACAGACCAGGATATGGATGATGAAAATAAGAATGTAATTGAGCTGGTGCAGAAAGCGTTTGATGAAATTCTTCTCCCAGAACCTGAAGAACTCTTTTCTGATGATAATTCCAAATCTGAAGGCGCTGATTCAGATGAGGTACTCTTAGAAAAAAACAATGGCCAGACAGAATGGAAAACCTCAGAATCCACAGAATCTCCAATAGCACAGAGGATGGAGACCAAATCTGATCAAAGAGCACCGAAAAGCTGGAGCAATCTGAAAAAGTTAATTCTCTGGAAAAGGTTTGTAAAAGCACTGGAGAAGGTAAGAAATATCCATCCTCAAAGGCCAAGACGTTTTCCTTCTGATGCTAACTTTGAAATGGAAAAAGTTTTTCTCAAGCACCAAACAGCAGAAGAGAAAAAGCATGCTGAGGAATGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACGAAGAGTGACACTTTTAGTAGAAGCTTTTGAAACAGTTCAGCCATTTCAAGATGTTGAAAGTAGTACACGGCTTTCTGCAACAACGGAGCATCAATCAAATCTAATTCAATCCCTTGAGAATTCCTCAAATCATAGCAAGGAAGAAGCATCACTTTCTCATAAGTGTACCATGGAACTGGCTGTTAGTACTGGTGATGATCCAATGATAGAAATGCACAGTCCTACCATGCTTAAAGAAAGATGTGTTGACTATACTGAGACTGAGGCAGTCGATAATATGCCAGTATTTAGAGATATTGAAGAAGACTTGAATGGAAAGCAATCTTTAGCCAGGAGTTATGATAATGAGAAGTTATCAAGTGACAATGATAATATTTTTCTTGGAGAGATCAAAGATACCAGATCAAGTTCCTCAAATATGCCAACTGAATTTACAAGCAGCCATGTGGAGGATTCAACCAATGAAGTAGTCAATGATGTTTCAGAAGACTTGCTATCCAGTTTGAATACAGAAAATCAACATATCAAATCTGAGTCACCTGGAAGAGATGTCGAAACCAAGAATCTGATTGGTGATAATGGGGAAAAGCTTTCCATGTCTAAAAGTTTAGTAGTAGAAGGTCTAGTTAGATCACTCAGATCTAACTTGATCGGTTCAGGAGCACCTGAGAAGCTATTAGATGAATCATCAGCTGATGGAAAAGAAGGAACTGAAAAAGTTAAGTTGGAAATTGAGACTGTTGAAGAGTTCCCTACAAAAGAACAATCTAAAGCTCCTAAGAGTGCTGCTGTAGAACCTGAGACCCCTGTGGAGAAACAGAACAACACAGGATTGTGGTTCTTGGTGTACAAACACATGGTATCAAATATGGCTGAAAGCAATTCCAAGTCACTGATTGATGGTGAAGATGGGAAAGAGTCAGCATTTGATGGAAGCAGAACACGAGGGTCTTCCATCTCTTACGAAGGCACAACTGTGAGTAATCAAGAGATGCAATTCAAGGACCATGCTGCAGCTGATCCAGAAGTTGCACTTCAACAGATAGAAGCCATCAAGATGGTAGAAGAAGCGATTGATTCAATTCTTCCAGATGATCAGGATGACTTAGCAGACAAGGAGTCACTCACTGGCAACACAGTATCAGACAACTCCAAACAATCTGACAGAACTGAAAGAGTGTACAGTGAAGACCTGAACCAAAAAGAAGAAAAGATGGAATCTGGGAATGAAATACTCCAGGAACAGCAAAAAGAATCAGCAGCACTAAAGGAACAATGCAAAACAAACCAGCCATTGTCTAGAAGCTGGAGCAATCTTAAAAAAGTGATTCTTCTTAGGAGATTCATCAAGTCATTGGAAAAAGTAAGGAAATTCAATCCAAGAGGCCCCAGATATCTACCTCTAGAGCCTGATTCAGAAGCTGAAAAAGTTAACTTAAGGCATCAAGACATGGAAGAAAGAAAAGGAACTGAAGAATGGATGCTTGATTATGCACTTAGACAGGTTGTTTCCAAATTAACCCCGGCTAGGAAAAGAAAAGTGGAGCTGCTGGTGGAAGCTTTTGAAACAGTCATGCCAACCATAACAAAATGA 3492 0.4089 MKVEIEGSQSDSAESQGVSGTDESVSGQSENRRLESKKKLKKVRSIRLVRLPSKRSSVRGRPQYDHLSILSSVSTENLEGLTPLGMADASPHYMKGTSSSHAKDSVQNTERLLFTKKTLGRMTTLKLKRSLTRKVSGRTEPKRKVKSSRSIMLVTVKGQKLSESSYGSGDQNWISASDAADNKTQRVITRRLSLKPVRILAKIPTFKSKNSSMESGQSPDTSLLRATCSSALKDSHFPDHIGFPQEESDSQGVSAVAKVCPYSYCSLHGHRHGNLPPLKRFVSMRRRKSKSQKPTKMDNQPVTRSNQFGNAKKGTRKTQTVHSEGGKSHFQNKKKLARDSCIRPHDTPESTVTESVEPVSTDGVQFSAPDIEMLEGEVTNTGKNMEPDNEVLEVSSVPKESTDASTTDMACRMKERDKKHINMWHLVYKHTVLSNTGKCENKPPFDGGNKEGREQGFLTTNEVNNSNCRDDCDTDQDMDDENKNVIELVQKAFDEILLPEPEELFSDDNSKSEGADSDEVLLEKNNGQTEWKTSESTESPIAQRMETKSDQRAPKSWSNLKKLILWKRFVKALEKVRNIHPQRPRRFPSDANFEMEKVFLKHQTAEEKKHAEEWMLDYALQKVISKLAPAQRRRVTLLVEAFETVQPFQDVESSTRLSATTEHQSNLIQSLENSSNHSKEEASLSHKCTMELAVSTGDDPMIEMHSPTMLKERCVDYTETEAVDNMPVFRDIEEDLNGKQSLARSYDNEKLSSDNDNIFLGEIKDTRSSSSNMPTEFTSSHVEDSTNEVVNDVSEDLLSSLNTENQHIKSESPGRDVETKNLIGDNGEKLSMSKSLVVEGLVRSLRSNLIGSGAPEKLLDESSADGKEGTEKVKLEIETVEEFPTKEQSKAPKSAAVEPETPVEKQNNTGLWFLVYKHMVSNMAESNSKSLIDGEDGKESAFDGSRTRGSSISYEGTTVSNQEMQFKDHAAADPEVALQQIEAIKMVEEAIDSILPDDQDDLADKESLTGNTVSDNSKQSDRTERVYSEDLNQKEEKMESGNEILQEQQKESAALKEQCKTNQPLSRSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPLEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVMPTITK 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 130 149 - -
Vium3680g00002 1163 Pfam Plant calmodulin-binding domain 543 646 IPR012417 GO:0005516
Vium3680g00002 1163 Pfam Plant calmodulin-binding domain 1057 1159 IPR012417 GO:0005516
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 652 678 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 853 903 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 287 336 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 500 553 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 504 525 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 929 952 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 133 147 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 652 681 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 999 1041 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 860 888 - -
Vium3680g00002 1163 SMART CaM_binding_2 1045 1159 IPR012417 GO:0005516
Vium3680g00002 1163 SMART CaM_binding_2 533 647 IPR012417 GO:0005516
Vium3680g00002 1163 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 332 657 IPR044681 GO:0005516
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 317 336 - -
Vium3680g00002 1163 Coils Coil 1028 1058 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 1 45 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 295 316 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 526 553 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 8 27 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 1018 1041 - -
Vium3680g00002 1163 MobiDBLite consensus disorder prediction 766 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3680g00002 Vium-Chr3680 22078 26066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3680g00002 423 648 Calmodulin-binding Proteins AT5G04020 31.837 6.09e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3680g00002 - - gmx:100804484 1637.08