Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3674g00014 ATGGGGTCGTCGTCGGCGTCGTTAAGTTCTCCAAAGAAGAGAGCGAAATCCCAGGTAGAGGAGGATGAGGACGACGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGAGCGAGGCGTTTCGATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTCTGCATCATGGAATGGGCTAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCCATGCACGGCGTATTTTCTTCCTCCCGGGACGTGAAGGTCCCTCATCGTGACCAGGCCTATCATCCTCATGGGAATGTGGCAATTGGTCCTGTCGATTCTTATGGCGAAACCAAATGTGGTGTTTGTCGTGCTGGAACAGATGAACATTTTCTACTACTTTGTGATCTTTGTGATTCTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCACGGGGGACCAATGCCAATGAAGAATCAGACCAACAATGTGTTGTGCCAGAGGCTGAGCCAACTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGGTTAAAAGACCAAGGACATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGTAGATTCAAAGGAAAAAGTCCTGCCGAAGGTGTCAATAGTATGCAGCGTAATATTGGGGCATTTCGTGAGAACTGGAATGCTTTGAGGAGTGGTTCATTACGGTTCCATTGTGATGCAGATCAAGCCAGCAGTACGGTTAGTCAAAAGCAAGATTCTAGATCATCATCACATGGCAAACTATATGATTCACAATCCGGGGCTTCCACAAGCGGGCAGCAATCCACTGTCCAGGGTGGTCCTTCTTCTAGCAAAACGTTGAATGAGAGAGTCTTTAAAGATAATGTTGACAAGGCTTGGAAAATGGTGGACAGAGCAAGGAGGAAGCAAGTAAATCCTCAAAGAATTAGAAGCAATCGGCAGGGAGTAGATAGACCCTCATCCAGTGGAGCTCGTAAAACATCAGTTGAACACTCTAATTTCCCAGAACTGAAAGATCAACATTCCAAAGAATTAAACTTAAGGAACACTGCGAAAGAGAAGCAGTGTGACTATTCTAGACTCTTCCAGAATTTAAAAAATTGCTCAACTCTAAAGTTGGAAGAGAAAAAGAAAAGTAGAGTTAGATGTGAGGAGATGATACACCGTGTAAGGGACCATACTACTCATTCAGAAGGATATTGTGAAAGTCCATTGTCTAGAAAGGTCCCTACTAATATCCAGGGTGGTGCTCCATTTCGTGAAGAAGAGAGAAATGCTTGCCAGGTAACTTCGGTAGATTTAGCTTCCTCGCGTGGCAAGTTTGTTAGTGACCTCTCCCCTTGTAAGGACGTGGAGGATCTTGTCAATGAAGAAAAGAAATTAGCTGCTAGTCTCGAGGATGGAAGCACAGGAAAAACTGACGATGCAAAAACTGAGATCCAGTCTCTTGTCAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCTAGGCAGGCCACCCATACCATCTTGGCTGCCTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTATGCTGTCATTCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCGAATTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAACGTTGTCAGTTCCACCATGATGGAGAAAGTGGGTTGTGCTTGA 1836 0.451 MGSSSASLSSPKKRAKSQVEEDEDDEESVCCGICYAERGVSIAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPHGNVAIGPVDSYGETKCGVCRAGTDEHFLLLCDLCDSASHTYCVGLGYTVPEGDWFCHDCAISRGTNANEESDQQCVVPEAEPTETVDIFDIVRETGSRVVKRPRTSPLQQNLSSPSAIPLSDRLSRFKGKSPAEGVNSMQRNIGAFRENWNALRSGSLRFHCDADQASSTVSQKQDSRSSSHGKLYDSQSGASTSGQQSTVQGGPSSSKTLNERVFKDNVDKAWKMVDRARRKQVNPQRIRSNRQGVDRPSSSGARKTSVEHSNFPELKDQHSKELNLRNTAKEKQCDYSRLFQNLKNCSTLKLEEKKKSRVRCEEMIHRVRDHTTHSEGYCESPLSRKVPTNIQGGAPFREEERNACQVTSVDLASSRGKFVSDLSPCKDVEDLVNEEKKLAASLEDGSTGKTDDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTMMEKVGCA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3674g00014 611 MobiDBLite consensus disorder prediction 367 381 - -
Vium3674g00014 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 94 IPR013083 -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 1 20 - -
Vium3674g00014 611 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vium3674g00014 611 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 319 340 - -
Vium3674g00014 611 SUPERFAMILY FYVE/PHD zinc finger 113 166 IPR011011 -
Vium3674g00014 611 SMART PHD_3 120 165 IPR001965 -
Vium3674g00014 611 PANTHER F18C1.6 PROTEIN 11 608 - -
Vium3674g00014 611 Pfam PHD-finger 121 165 IPR019787 -
Vium3674g00014 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 170 IPR013083 -
Vium3674g00014 611 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 274 318 - -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 344 365 - -
Vium3674g00014 611 SMART ring_2 31 71 IPR001841 -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 205 244 - -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 207 225 - -
Vium3674g00014 611 Pfam Ring finger domain 31 72 IPR001841 -
Vium3674g00014 611 MobiDBLite consensus disorder prediction 274 381 - -
Vium3674g00014 611 SUPERFAMILY RING/U-box 20 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3674g00014 Vium-Chr3674 196369 204322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3674g00014 112 168 C2H2 Transcription Factor Family AT3G01460 37.931 6.38e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium3674g00014 PHD 5.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3674g00014 - - gmx:100808541 863.603