Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3674g00013 ATGACTGCCAACGGAGGGAGTTGTCTGAAGACTCATGATTTCCTGCAGCCACTGGAGCGGCTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCCACGGATGAAATATCATGGGTTGTTGAGAAGGCAGGACCTTCGGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCATATGTTAATAATAACAATAACAATAATAATCAAAGGCTTCCCAAAGCGGAGACGTCTCTTTTTGCGCGTCAGGCAACTAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCGTATACTACTTCGAGCGGTTTCACTTTGTGGGAAGACTCATCGGGGAAGAGGGGCAAAAGAAAGGAGAATAATTCGGGCGACAGACCATCTACTGGAGAGTGTGCGGCGACAAAGCTAGGGCAGTGGACATCAACGGAGCGGACCTCACAGTCGTTTTGTACCAATCGTCACGACAGCTTCAGCTCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATGGAAATGATGAAGTCCGCAAGGGATAGTGCCCAGGATGAAGTGCTGGAGAATGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATAACCAAAGAGAGCTGAGGGTGAAAGTGGATGGTAAGAGTACCGATCAAAAGCCAAATACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCAAGAAAAATTGATGCCATGGCAGAGAAATAATGACAAGCCAGCAGAAAACTTCCAACATCGTGGCACTGATAATGGGTCAAGTCCATCTCCAGCACTGCTTTTTTCTTCAAAGAATGAGGAGAGAAATATTAGCATCTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGTACAGCAACTACCTCCAAGACAGTGGACCATCAGGCCGGAATAGTGAATAACGCTTTTCCAATTCCTATTTCCTCACAGCTAAATTTCTTCCCTCCAGCCCAAATGGGTGGTCCAGGTGGAGTAGTGTCTCAGGTCGCACATATACCGGTTTCTGATGCCGAGAACAAATATCAACCTTCAGTGGAGTGTCAGACCATGGCGGCTACCAGTGAAAAGCTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGCATACGCTTACACATGCACTGCAAAGTTCAGGAGTGGATCTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAACTGTACCCGTGTCAGTGTGTGGTGCTAAGGATGGTGAAGTACCTTCTAACAACAATCAAAAGATGATGCGCTCAAGAGTTGCTAGCTCAGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAGAAATTAA 1596 0.4511 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVNNNNNNNNQRLPKAETSLFARQATSTDRNDENSNCSSYTTSSGFTLWEDSSGKRGKTXKENNSGDRPSTGECAATKLGQWTSTERTSQSFCTNRHDSFSSRSSSQTTGQKNQSFMEMMKSARDSAQDEVLENEETFFLKKEPSNNQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEQEKLMPWQRNNDKPAENFQHRGTDNGSSPSPALLFSSKNEERNISISPTIPGSTQNVESGLSTATTSKTVDHQAGIVNNAFPIPISSQLNFFPPAQMGGPGGVVSQVAHIPVSDAENKYQPSVECQTMAATSEKLKEKELAIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTVPVSVCGAKDGEVPSNNNQKMMRSRVASSGKSDQAIKKLKICRN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3674g00013 532 Pfam Helix-loop-helix DNA-binding domain 231 280 IPR011598 GO:0046983
Vium3674g00013 532 CDD bHLH_AtBIM_like 228 304 - -
Vium3674g00013 532 MobiDBLite consensus disorder prediction 316 357 - -
Vium3674g00013 532 MobiDBLite consensus disorder prediction 127 184 - -
Vium3674g00013 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 300 IPR036638 GO:0046983
Vium3674g00013 532 MobiDBLite consensus disorder prediction 186 245 - -
Vium3674g00013 532 MobiDBLite consensus disorder prediction 304 357 - -
Vium3674g00013 532 MobiDBLite consensus disorder prediction 111 245 - -
Vium3674g00013 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Vium3674g00013 532 Gene3D - 226 301 IPR036638 GO:0046983
Vium3674g00013 532 SMART finulus 235 285 IPR011598 GO:0046983
Vium3674g00013 532 FunFam BHLH domain class transcription factor 227 299 - -
Vium3674g00013 532 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 9 529 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3674g00013 Vium-Chr3674 178592 189353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3674g00013 6 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.582 1.70e-107 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3674g00013 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3674g00013 - - gmx:100808016 818.535