Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3674g00010 ATGCAGCAAATACACTCCATGGCACCAGGAACAGCGGGAGGAGGAGGAGGAGGAGGAGCCAGGTTTTTCTCCGGCACCGCCTCCGCGGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACGCCGCCCCCCCGCCCCCGCCGCCCGACCCGGACCATTCGAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCCGTATCGGCGCCGATAAACTCCGATTCCACCAACATGCAAGAGTCGAAGTTGTCGGTCCCCGTGGATCCTGTTTTGGGAACGAATCCTCTGGAGCAGGGAGCAGGGGACTGCGGTGGTATCTTCTCAGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCCTTGGGTTTCGGTTTCGGCAACTGTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGAGCAGCAACCAGGAATTGAAGTTGGCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGACTCTGCATGGTAAAACCAACCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTCGATCTCCCTAACACCGTCGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCCCCTGA 867 0.594 MQQIHSMAPGTAGGGGGGGARFFSGTASADRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDAAPPPPPPDPDHSSSESSSLTAAAAEPVSAPINSDSTNMQESKLSVPVDPVLGTNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLGFGFGNCLPDASSFQWQHSKVSSNQELKLAESSFLDHTVDLSTLHGKTNHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLPP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3674g00010 288 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Vium3674g00010 288 MobiDBLite consensus disorder prediction 87 149 - -
Vium3674g00010 288 MobiDBLite consensus disorder prediction 119 149 - -
Vium3674g00010 288 MobiDBLite consensus disorder prediction 1 25 - -
Vium3674g00010 288 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Vium3674g00010 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 207 IPR045174 GO:0003700|GO:0006355
Vium3674g00010 288 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3674g00010 Vium-Chr3674 150055 151910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3674g00010 30 284 C2C2-Dof Transcription Factor Family AT5G60850 45.263 9.74e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium3674g00010 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3674g00010 - - gmx:778097 418.698