Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3674g00004 ATGGGAAGGGGAAGAGTGGAGTTGAAAAGGATCGAAAACAAGATCAACAGGCAAGTCACCTTCTCAAAGAGAAGGTCTGGTTTGATCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTGGCTCTCGTAGTCTTCTCTACTAAAGGCAAACTTTTGGAATACTCGAACCAGCCTTCTATGGAAAGAATTCTTGAACGGTATGAGAGGCATTCGTATGCGGAGAAGCAAGAAGGTGCAGCTGATCAACCACCAAATGAAAACTGGGCTATAGAACACGAAAAGTTGAAGGCTAGGGTGGAGGTACTACAGCAACACCAAAGGAATTTCATGGGAGAAGAGCTTGATAACATAAATCTTAGAGGACTTCAGAGTTTAGAACAACAACTTGATTCCGCCCTCAAACACATTAGATCACGAAAGAACCAAGCCATGCATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTTCGGGAACGTAACAACTTGCTCGCCAAGAAGATAAAAGAAAAAGAGAAGGCAGTGGTTCCTCAAGAACTGGAGGGGTTGCTAAATAACGGAGATGTGACTTCTCTCATGGTAACTAAGCCATTGGAGTCCCTGAATATTGGAGGCTCCCCAGAAGCGAGATGTAATGAAGGAACTCCAACATCAACTCAACCTAAAACCATAATTCCTCCTTGGATGGTGACTCTTCCTACAGATGAATAG 723 0.4385 MGRGRVELKRIENKINRQVTFSKRRSGLIKKAREISVLCDADVALVVFSTKGKLLEYSNQPSMERILERYERHSYAEKQEGAADQPPNENWAIEHEKLKARVEVLQQHQRNFMGEELDNINLRGLQSLEQQLDSALKHIRSRKNQAMHESISELQKKDKALRERNNLLAKKIKEKEKAVVPQELEGLLNNGDVTSLMVTKPLESLNIGGSPEARCNEGTPTSTQPKTIIPPWMVTLPTDE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3674g00004 240 MobiDBLite consensus disorder prediction 205 228 - -
Vium3674g00004 240 Coils Coil 151 177 - -
Vium3674g00004 240 Coils Coil 125 145 - -
Vium3674g00004 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vium3674g00004 240 Coils Coil 88 108 - -
Vium3674g00004 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vium3674g00004 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3674g00004 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium3674g00004 240 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vium3674g00004 240 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vium3674g00004 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vium3674g00004 240 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3674g00004 Vium-Chr3674 94895 103453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3674g00004 1 176 MADS-box Gene Family AT1G26310 64.045 2.99e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium3674g00004 K-box 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3674g00004 K09264 K09260 gmx:100798351 373.629