Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3674g00003 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGCTTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTTTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCCAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTGGAGACCACCCGACCAATTAACGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGATCACAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAACTGATCTTGAGCAGCTAGAGAATCAACTAGAGGTAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACATTGCTAGTTGAAACTAACAATGTGTTAAGGAGTAAGTTGGAAGAAAGTAATAACTCACAAGTGAGTCTGGCTTTGGAAGCTGGAGGACCTAACATCCATTACACAAACTTTCCTCCTCAAACAGAGGGATTCTTCCAACCAGCAGGAGTGAATTCCAACTTGCAAATCGGATTCAACCAGATTGGTGGTGATGATGCAAACGTTGGAGCTTCATCCTTGAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 726 0.4421 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDIQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEVALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEESNNSQVSLALEAGGPNIHYTNFPPQTEGFFQPAGVNSNLQIGFNQIGGDDANVGASSLSMHGFASGWML 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3674g00003 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vium3674g00003 241 Coils Coil 116 143 - -
Vium3674g00003 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vium3674g00003 241 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3674g00003 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium3674g00003 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium3674g00003 241 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vium3674g00003 241 FunFam MADS-box transcription factor 1 13 88 - -
Vium3674g00003 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3674g00003 Vium-Chr3674 78898 83840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3674g00003 1 214 MADS-box Gene Family AT5G15800 60.633 3.27e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium3674g00003 K-box 9.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3674g00003 K09264 - gmx:100797819 430.254