Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3674g00002 ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGAGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATAAATTCTTTCTTGGGCTGGGAACTAAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACCCCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGCAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGTAGGCATCAACAACACCAACACAGTGACAGAATCACTGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCATTGATGCGGGGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCCAAGAGAGTGAGAGTTTCGGGGGTTCACTCTCAGACTGCTTATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAAGATTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCTACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTGTGAGTAGCTTCTGGAGACCTATCAAAGCAGAACAGGGGGCTAGTTTTAGGCATCTTTCTTCTATGCCTGTATCCAATGGACATCCTCAGTCAAGATCTTTGTTCCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAATTGTGCAACGTCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACATGCCCTTGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGACTCACTCCATGGTTATTCCAAGCGGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTGTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCACAATGATATTGTAAACTTTGATATGGCAGATGGTATATTCCATGGTTCAGAATTCATGAATGTGAAGGATCGACTTCCCTGCGAAGATGGTGCAACCATAGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1656 0.4493 MESWSFVPEEKESVSNEALSPPNTLGRTINSFLGWELKTPCGFSNDMLGLGQHPIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRHQQHQHSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDAIDAGFSKVLSSSESSTPPKRVRVSGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFIRPEMLPSGVMCSEKYGVSSFWRPIKAEQGASFRHLSSMPVSNGHPQSRSLFPSYNGKQFPFLHENCATSTTGSIFCESNSHYPHALGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLTHSMVIPSGHGHHYNMSQVSEKIGISSQTCSSRVSDSFPSELNHADGSHLSPVLISDHNDIVNFDMADGIFHGSEFMNVKDRLPCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3674g00002 551 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Vium3674g00002 551 MobiDBLite consensus disorder prediction 89 120 - -
Vium3674g00002 551 Coils Coil 519 539 - -
Vium3674g00002 551 MobiDBLite consensus disorder prediction 1 20 - -
Vium3674g00002 551 MobiDBLite consensus disorder prediction 98 120 - -
Vium3674g00002 551 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Vium3674g00002 551 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 106 537 IPR044817 GO:0003677
Vium3674g00002 551 Pfam SBP domain 174 247 IPR004333 GO:0003677
Vium3674g00002 551 SUPERFAMILY SBT domain 172 251 IPR036893 GO:0003677|GO:0005634
Vium3674g00002 551 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3674g00002 Vium-Chr3674 31637 36683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3674g00002 128 289 SBP-box Gene Family AT1G69170 56.173 1.34e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium3674g00002 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3674g00002 - - gmx:100817547 958.362