Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3672g00002 ATGACGGTTTCTTCCTTCTTCAACAGGGCCTCCAGGGTTCTAAGCTCCTCCAATTTTCTTTTTCTCTGCACTCTCAGTGGTGGTGGTGTGGTTGCGTACTCAGAATCACAAACAGGAGCTGAACGTCCTAGTATTCAAGCTAATGAGCCCTCCAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGATCTGGATGCATCATTTTATGATGTTCAGGTTGTTTCGCCGCGTAATTACTTTGCATTTACTCCCTTATTACCTAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATTAAAAAGAGAAAAGGAGAAATAAACTTCTGGGAAGCAGAATGCATCAAGATTGATTCTTCAAACAAAAAGGTTTTCTGCCGGTCCAATATTGACAACTTGGTGGGAAGTGGCGAATTTTCCTTGGACTATGATTTCTTGGTTGTAGCAGTGGGAGCACAAGTAAATACATTCAACACTCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAGGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGTCTGTTCTTCCTAGTATAACTGACCAAGAGCAAAGGTCAATTCTTCATTTTGTTGTAGTGGGAGGAGGTCCAACTGGTGTGGAATTTGCTGCAGAATTGCATGATTATGTCCTAGACGATTTAATCAAATTATATCCAACTGTCAAAGATAAAGTGAAAATAACAGTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAAAAATTTACAAGAGATGGGATAGAAGTTCAAACAGGATGCCGGGTCATCGGTGTTGATGACAAGGTTATTACAATGAAGGAAAAATCAACTGGAGAGGTTTGCTCAGTGCCCCATGGATTGGTTGTCTGGTCAACTGGCATTTCAACCCTTCCAGTTATAAGGGACTTTATGAAAGAAATTGGTCAGGCTGAAAGGCATGTACTAGCAACAAATGAATGGTTGCGTGTGAAGGGATGTGAAGAGGTGTATGCCCTTGGTGATTGTTCTAGCATAACTCAACGTAAAATCATGGATGATATCACAGCCATATTTGAGGCTGCAGACAAAAATAAGTCAGGCACCTTAACTATTGAAGAATTCCAGGAGGTGGTGGATGACATTGTCTTAAGATATCCGCAAGTTGAGCACTATCTAAAGCAAAAACATCTGCGTGATTTTAGCACACTATGGAAAGATTTGCAAGGGAATGAAAGCAAGGAAATAGGCATAGAAGCATTTAAGCTGGCCCTTTGTCATGCAGATTCACAGGTGAAGAGTCTGCCAGCAACTGCACAGGTTGCTGCCCAACAGGGTGCATATCTAGCTAGATGCTTCAACCACATGGATCATGCTGAAGAGAATCCTGAAGGTCCTCGACGTTTTAGTGGATCTGGACGCCATAAGTTTCTGCCCTTTCGGTATAGGCATCTGGGTCAATTTGCTCCACTGGGTGGGGAGCAGACAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGAACAAGGGTCTTGGTCGTGTCTGATTGGACAAGAAGATTCATATTTGGCAGGGATTCAAGTCGAGTTTAA 1722 0.4297 MTVSSFFNRASRVLSSSNFLFLCTLSGGGVVAYSESQTGAERPSIQANEPSKKKVVVLGTGWAATSFLKDLDASFYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEINFWEAECIKIDSSNKKVFCRSNIDNLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQRIRLSVIDCFEKSVLPSITDQEQRSILHFVVVGGGPTGVEFAAELHDYVLDDLIKLYPTVKDKVKITVIQSGDHILNMFDERISSFAEQKFTRDGIEVQTGCRVIGVDDKVITMKEKSTGEVCSVPHGLVVWSTGISTLPVIRDFMKEIGQAERHVLATNEWLRVKGCEEVYALGDCSSITQRKIMDDITAIFEAADKNKSGTLTIEEFQEVVDDIVLRYPQVEHYLKQKHLRDFSTLWKDLQGNESKEIGIEAFKLALCHADSQVKSLPATAQVAAQQGAYLARCFNHMDHAEENPEGPRRFSGSGRHKFLPFRYRHLGQFAPLGGEQTAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3672g00002 573 SMART efh_1 378 406 IPR002048 GO:0005509
Vium3672g00002 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 270 IPR036188 -
Vium3672g00002 573 PANTHER NADH DEHYDROGENASE 47 573 IPR045024 GO:0003954|GO:0006116
Vium3672g00002 573 Gene3D - 441 573 - -
Vium3672g00002 573 Gene3D - 43 429 - -
Vium3672g00002 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 403 - -
Vium3672g00002 573 SUPERFAMILY EF-hand 367 455 IPR011992 -
Vium3672g00002 573 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Vium3672g00002 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Vium3672g00002 573 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Vium3672g00002 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 572 - -
Vium3672g00002 573 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Vium3672g00002 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Vium3672g00002 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Vium3672g00002 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3672g00002 Vium-Chr3672 3718 10796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3672g00002 5 573 Chloroplast and Mitochondria Gene Families AT4G21490 63.841 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3672g00002 K03885 - gmx:100793566 1068.91