Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3672g00001 ATGCGTTGGTCTTCCAGATTCTTTCACACAGCCTCGAGGGCTTTCAATGAGTATCCATCATGGTCCAAGTCTATTCTTGTTTGCACTGTCATCAGTGGAGGAGGAGCAGTGGCATTTTGTGATGCCAAACCAGAACATAGCAATGAACCTCCAAAGAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTCTGAAAAATATGAAAAGCAACTCCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCATTCACTCCATTGCTACCAAGTGTAACATGTGGCTCAGTGGAAGCAAGGAGCGTCGTTGAACCCATTCGCAGTATCACCCGCAGGAGCGGTGTAAATATTAGTTTTAGTGAAGCTGAATGCTACAAGATCGATCAAAAGAATAACAAAGTTTTTTGTCGTGCTGTGAAAGACAAAAAGTCTGGTGAACGAGAAGAATTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGTCGTTCTAATACCTTCAACACACCTGGTGTTGAGGAACACGCCCATTTCCTGAAGGAAGTGGATGAAGCTTTAAAAATCCGTCGGAAAGTGGTTGAACTTTTTGAAAGAGCTAGCCTCCCTACTTTACCAGAGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAGTCGTTGGTGGTGGTCCAACTGGGGTAGAATTTTCTGCTGAACTTCATGACTTTGTACATGAGGATCTGGCTTATTTATATCCTGAACTTGAAAAGTATGTGAAGATTATTCTCTTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACTGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTAATGTGAAGTTGGGATCTATGGTTGTGAAAGTTAGTGAAAAGGAAATCACTTCCAAAGAAAGGTCAACTGGTGAAATTGTTACCATACCTCACGGAATGGTAGTTTGGTCAACTGGTATCGGTGCTCGCCCTGAAATAGTTGAATTTATGAAACAGCTTGGCCAGATTAACAGACGTGCATTGGTCACTGATGAATGGCTGAGGGTGGAAGGATCTGACAACATCTATGCTCTTGGTGATTGTGCCACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACCAGAACAATTCCGGAAAATTAGATCTTAAAGCATTTAAAGACGTTGTTGATGACATTATTGAAAGGTACCCTCAAGTGGAAATTTATTTAAAGAAGAACCAAATGAAAGACATG 1278 0.4092 MRWSSRFFHTASRAFNEYPSWSKSILVCTVISGGGAVAFCDAKPEHSNEPPKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGSVEARSVVEPIRSITRRSGVNISFSEAECYKIDQKNNKVFCRAVKDKKSGEREEFSIDYDYLVIAMGGRSNTFNTPGVEEHAHFLKEVDEALKIRRKVVELFERASLPTLPEEEKKKLLSFVVVGGGPTGVEFSAELHDFVHEDLAYLYPELEKYVKIILLEAGDHILNMFDKRITEFAEQKFARDGINVKLGSMVVKVSEKEITSKERSTGEIVTIPHGMVVWSTGIGARPEIVEFMKQLGQINRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADQNNSGKLDLKAFKDVVDDIIERYPQVEIYLKKNQMKDM 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3672g00001 426 Gene3D - 43 410 - -
Vium3672g00001 426 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Vium3672g00001 426 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vium3672g00001 426 PANTHER NADH DEHYDROGENASE 44 380 IPR045024 GO:0003954|GO:0006116
Vium3672g00001 426 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 404 - -
Vium3672g00001 426 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Vium3672g00001 426 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Vium3672g00001 426 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 369 - -
Vium3672g00001 426 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Vium3672g00001 426 SUPERFAMILY FAD/NAD(P)-binding domain 213 372 IPR036188 -
Vium3672g00001 426 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3672g00001 Vium-Chr3672 7 2897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3672g00001 7 423 Chloroplast and Mitochondria Gene Families AT4G21490 65.166 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3672g00001 K03885 - gmx:100820044 749.584