Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3670g00001 ATGGGTTCAACTCCGACCGCCGTGTCTGATGACAACTCATTCGGTGAATCTGATACGATTGAGATAACTGGGAAGGTCATGGTGGTGGCTATAATATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGGGGAGAGCGCCGCCCCTCAGCCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGAGTCACCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTGCCAGTGTTGGTGTTCCAACCGGAGAACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTATTGAAGGGGAAAAGGCCAGGCTTTTGCCGAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTATGAATCTTCTAAAACAAGTCAAGAGAATGATTTCTCAGGGAACACTGAAACATCATCATCATCAATTGAAGAGAATTCAGGTGCTATGAATGGTTTACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTTTGGGGTTTCCTTGGAAGAGGAAGAAGGTAGTTCTCAGCAGCCAACTTCTCCTCCATCATCTACACCACCTTCTTCTTCTTCAGATGGTGGCAATGTTAATGGCAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTCTATCCCCTTCTGGAAGTAGGTGTGTTGAAGATGAGGTGAAATCACCAATGGCTGTCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGTACAGAGCTAG 951 0.4669 MGSTPTAVSDDNSFGESDTIEITGKVMVVAIIFLFMVVVFVLVLHLYAKWFWWNMGESAAPQPRQRRRRRRRFVFAPGQDPVVYESHQVGLDPSVLKSLPVLVFQPENFKEGLECAVCLSEIIEGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGYESSKTSQENDFSGNTETSSSSIEENSGAMNGLQSSIFPTNVLVWGNHTQVSSFGVSLEEEEGSSQQPTSPPSSTPPSSSSDGGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCVEDEVKSPMAVTLRSFKRLLSRDKKLSPCSPSSVDVEQVQS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3670g00001 316 MobiDBLite consensus disorder prediction 164 189 - -
Vium3670g00001 316 CDD RING-H2_EL5-like 114 157 - -
Vium3670g00001 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 185 - -
Vium3670g00001 316 SMART ring_2 115 156 IPR001841 -
Vium3670g00001 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 161 IPR013083 -
Vium3670g00001 316 Pfam Ring finger domain 114 157 IPR001841 -
Vium3670g00001 316 MobiDBLite consensus disorder prediction 216 251 - -
Vium3670g00001 316 MobiDBLite consensus disorder prediction 216 230 - -
Vium3670g00001 316 MobiDBLite consensus disorder prediction 262 281 - -
Vium3670g00001 316 SUPERFAMILY RING/U-box 95 163 - -
Vium3670g00001 316 FunFam RING-H2 finger protein ATL3 83 162 - -
Vium3670g00001 316 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3670g00001 Vium-Chr3670 1293 2754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3670g00001 7 299 C3H Transcription Factor Family AT1G53820 42.173 3.19e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3670g00001 - - gmx:100775523 440.654