Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium366g00002 ATGGAGGTGATGGAGAATGGTGGTGCAAACATGAAGGGGTTGTTGAACAAGGAGATGAGACATGGAAGAACAGCACATAACATGTCGTCTTCTTCACTGCGCAAAAAATCTGACCTAACTCTTGTGTCTAAGGTTAATTTTGGTCCTCTAAAAGACATGTTGGTGAACATTCAAGAGGTTGTTTTGGGAACCAAACTCTCTATTCTCTTACCAGCTGTTCCAATTGCCATTGTTGCTCAAAGTTATGGATTTGGAAGACCTTGGGTTTTTGCATTGAGTTTATTGGGGCTTACCCCACTTGCTGAAAGACTCAGTTTCTTGACAGAACAAATTGCTTGCTACACTGGTCCCACAGTGGGAGGACTTATGAATGCAACATGTGGGAATAGTACAGAGCTCATTATAGCAATTTTTGCCCTTAGCCATAATAACATTGCTTTGGTCAAATATTCTCTTCTGGGTTCTGTAATTTCTAATCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGAGGTCTTGTAAACCTTAGAGAGGAGCAGAAATATGATAGAAGACAAGCAGATATGAACTTGCTTATGATGTTTGTGGCATTGCATTGTCACTTGTTGCCAATGCTGTTCCATTATGCTGCTGTCTCAGAAGGTGTCACTGCAGAATCATCTCTGCAGTTGTCAAGAGCTGCTAGCATTATTATGGTGATAGCCTATTTTGCCTACCTTGTGTTCCAGCTTTGGACTCACAGACAACTATTTCAAAACCACGATCAAAATGAAGAAGAGGGTGACACTGATTCAGATGCAGCAGTGATAGGATTCTGGAGTGGGTGTGTTTGGCTGGTTGGGATCACTGTGATCATTGCAGTGCTTTCTGAATATGTGGTGGAAACAATTGAGGATGCATCTAATTCATGGGGTTTGTCTGTTAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGTAATGCAGCAGAACATGCTGGAGCAATCATATTTGCTTTCAAGAACAAACTGGACATTTCTTTGGGTGTTTGTCTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCCCTTTGTGTGATTGTTGCTTGGATTCTGGGAATTGAAATGGACCTCAGCTTCAACCTCTTAGAAACAGGTTCACTTGCTTTGGCAATAATAACCACAGCCTTCACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTGCTATTTCTGTGCTACATTATCATTGGGACATGCTTTTTCGTACAAAGAACACCTTCCGACAAAAATAATGCTTCCAGCATAATGCTCAAATCAACAAGGGAAGCAGTTTTCAGCGTTTAA 1335 0.4135 MEVMENGGANMKGLLNKEMRHGRTAHNMSSSSLRKKSDLTLVSKVNFGPLKDMLVNIQEVVLGTKLSILLPAVPIAIVAQSYGFGRPWVFALSLLGLTPLAERLSFLTEQIACYTGPTVGGLMNATCGNSTELIIAIFALSHNNIALVKYSLLGSVISNLLLVLGTSLFCGGLVNLREEQKYDRRQADMNLLMMFVALHCHLLPMLFHYAAVSEGVTAESSLQLSRAASIIMVIAYFAYLVFQLWTHRQLFQNHDQNEEEGDTDSDAAVIGFWSGCVWLVGITVIIAVLSEYVVETIEDASNSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVCLGSATQISMFVVPLCVIVAWILGIEMDLSFNLLETGSLALAIITTAFTLQDGTSHYMKGLVLFLCYIIIGTCFFVQRTPSDKNNASSIMLKSTREAVFSV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium366g00002 444 NCBIfam calcium/proton exchanger 69 418 IPR004798 GO:0006816|GO:0015369
Vium366g00002 444 FunFam Vacuolar cation/proton exchanger 263 419 - -
Vium366g00002 444 Pfam Sodium/calcium exchanger protein 88 245 IPR004837 GO:0016020|GO:0055085
Vium366g00002 444 Pfam Sodium/calcium exchanger protein 277 413 IPR004837 GO:0016020|GO:0055085
Vium366g00002 444 Gene3D - 263 418 IPR044880 -
Vium366g00002 444 Gene3D - 117 257 IPR044880 -
Vium366g00002 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 422 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium366g00002 444 NCBIfam calcium/proton exchanger 51 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium366g00002 Vium-Chr366 41670 46087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium366g00002 3 426 Antiporters AT2G38170 66.047 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium366g00002 K07300 - gmx:100797538 701.049