Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium365g00001 ATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACGCCCTGCGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGATCCGAAAGCCAATGGAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGAAAGAACAACCGTCTGCAATAGTGATCCAAGGAGGTTACATTGTGGCTGACCCTGATTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAGAACCATTTTCATGGATACGTACATCGATGACTTGATTCAAGGTGAAGGATATTTGGCATGGGAAACATTAGATGGACCTACTGGTATGGATACTTGCTTTTATGCGGAGTATCACAACACTGGCCCTGGTTCAGACAAATCCAAACGTGTGAATTGGAATGGGATTTTGAACCTCAATTCGAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGGGTTCCTTGCTTCCATGGCGTGCCCCCACACTATAAGCACAAGAACACCACATTAACCTGGTGA 711 0.4444 MNMGFENSAGAEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHALRQYYRDCTISGTIDFVFGNALAVFQNCTFVIRKPMENQQCIVTAQGRKEKEQPSAIVIQGGYIVADPDFYPVRFVNKAYLARPWKTYSRTIFMDTYIDDLIQGEGYLAWETLDGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFHGVPPHYKHKNTTLTW 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium365g00001 236 Gene3D - 1 223 IPR012334 -
Vium365g00001 236 ProSitePatterns Pectinesterase signature 2. 54 63 IPR033131 -
Vium365g00001 236 Pfam Pectinesterase 2 208 IPR000070 GO:0030599|GO:0042545
Vium365g00001 236 PANTHER PECTINESTERASE 2 213 - -
Vium365g00001 236 SUPERFAMILY Pectin lyase-like 2 220 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium365g00001 Vium-Chr365 155 1026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium365g00001 2 218 Carbohydrate Esterase AT5G49180 53.917 6.23e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium365g00001 K01051 - gmx:100803527 421.779