Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3653g00002 ATGGCAAACGATGACAGAAAACTTATAGCTGGAGTAGATTTAGACGAGTATATTAGCAAGAAAAAGGGTTCATTAATCATTTGTCATATATATCNGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAACAAGAAGATGCTGACTTCTCTTCATCATCTGGACAATTCTCAAATACCAAATCCCCATCTAGCAAACGGGCAACCGATGTCTGGTGATATTCCATATGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGGTCCTATGGCTAATACAAAGCAACCGGGTCTTGAAAGTGATGAAGAGATAAGGAGAGTGCCAGAGATTGGAGGGGAAAGTGGTGGAACTGCAGCCTCTCGGCCGGAAGCTGGTTCAAATGCTGGTGCAGAACGTGCTCAGGGGACGGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTTAAGAGGCTATTGAGGAACAGAGTTTCGGCCCAACAAGCGAGGGAGAGGAAGAAGGCTTACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 711 0.4402 MANDDRKLIAGVDLDEYISKKKGSLIICHIYXRSTMAKETIPRQGCNGKNKKMLTSLHHLDMXSQIPNPHLANGQPMSGDIPYATSDAQSMQTTSGPMANTKQPGLESDEEIRRVPEIGGESGGTAASRPEAGSNAGAERAQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3653g00002 237 Gene3D Single helix bin 180 221 - -
Vium3653g00002 237 SMART brlzneu 157 221 IPR004827 GO:0003700|GO:0006355
Vium3653g00002 237 MobiDBLite consensus disorder prediction 144 174 - -
Vium3653g00002 237 Pfam bZIP transcription factor 158 219 IPR004827 GO:0003700|GO:0006355
Vium3653g00002 237 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 222 IPR004827 GO:0003700|GO:0006355
Vium3653g00002 237 CDD bZIP_HY5-like 162 213 - -
Vium3653g00002 237 FunFam Transcription factor HY5 180 221 - -
Vium3653g00002 237 SUPERFAMILY Leucine zipper domain 161 219 IPR046347 GO:0003700|GO:0006355
Vium3653g00002 237 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 86 234 IPR044280 GO:0000981|GO:0045944
Vium3653g00002 237 Coils Coil 156 225 - -
Vium3653g00002 237 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 164 179 IPR004827 GO:0003700|GO:0006355
Vium3653g00002 237 MobiDBLite consensus disorder prediction 79 102 - -
Vium3653g00002 237 MobiDBLite consensus disorder prediction 61 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3653g00002 Vium-Chr3653 3993 6979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3653g00002 105 218 bZIP Transcription Factor Family AT5G11260 75.652 8.92e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium3653g00002 bZIP_1 3.7e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3653g00002 K16241 - vum:124835221 463.766