Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3653g00001 ATGGAACGAAGTGGTGGGATGGTAACTGGGTCGCATGAAAGGAATGAACTTGTTAGAGTTAGACACGGTTCCGATAGTGGGTCTAAACCCTTGAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGCGATGTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTAGATTCACAAGTCAGCAAGAGGGTGCTGGAGTGGAGGGTGATGATGATGAAGAAGAAGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAACAAGAAGATGCTGACTTCTCTTCATCATCTGGACATGATTCTCAAATACCAAATCCCCATCTAGCAAACGGGCAACCGATGTCTGGTGATATTCCATATGCTACTTCTGATGCTCAATCTATGCAAACTACATCAGGTCCTATGGCTAATACAAAGCAACCGGGTCTTGAAAGTGATGAAGAGATAAGGAGAGTGCCAGAGATTGGAGGGGAAAGTGGTGGAACTGCAGCCTCTCGGCCGGAAGCTGGTTCAAATGCTGGTGCAGAACGTGCTCAGGGGACGGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTTAAGAGGCTATTGAGGAACAGAGTTTCGGCCCAACAAGCGAGGGAGAGGAAGAAGGCTTACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 954 0.4507 MERSGGMVTGSHERNELVRVRHGSDSGSKPLKNLNGQICQICGDTIGLTATGDVFVACHECGFPLCHSCYEYELKNVSQSCPQCKTRFTSQQEGAGVEGDDDEEEDADDLDNEINYGQGNNSKAGMQWEEQEDADFSSSSGHDSQIPNPHLANGQPMSGDIPYATSDAQSMQTTSGPMANTKQPGLESDEEIRRVPEIGGESGGTAASRPEAGSNAGAERAQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3653g00001 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Vium3653g00001 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 239 302 IPR004827 GO:0003700|GO:0006355
Vium3653g00001 317 MobiDBLite consensus disorder prediction 224 261 - -
Vium3653g00001 317 SUPERFAMILY RING/U-box 23 108 - -
Vium3653g00001 317 MobiDBLite consensus disorder prediction 1 29 - -
Vium3653g00001 317 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Vium3653g00001 317 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 166 314 IPR044280 GO:0000981|GO:0045944
Vium3653g00001 317 SMART brlzneu 237 301 IPR004827 GO:0003700|GO:0006355
Vium3653g00001 317 MobiDBLite consensus disorder prediction 1 26 - -
Vium3653g00001 317 Gene3D Single helix bin 260 301 - -
Vium3653g00001 317 Coils Coil 236 305 - -
Vium3653g00001 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 244 259 IPR004827 GO:0003700|GO:0006355
Vium3653g00001 317 CDD bZIP_HY5-like 242 293 - -
Vium3653g00001 317 MobiDBLite consensus disorder prediction 159 182 - -
Vium3653g00001 317 FunFam Transcription factor HY5 260 301 - -
Vium3653g00001 317 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Vium3653g00001 317 MobiDBLite consensus disorder prediction 90 261 - -
Vium3653g00001 317 SUPERFAMILY Leucine zipper domain 241 299 IPR046347 GO:0003700|GO:0006355
Vium3653g00001 317 CDD mRING-HC-C4C4_CesA 37 87 - -
Vium3653g00001 317 MobiDBLite consensus disorder prediction 96 112 - -
Vium3653g00001 317 MobiDBLite consensus disorder prediction 114 152 - -
Vium3653g00001 317 Pfam bZIP transcription factor 238 299 IPR004827 GO:0003700|GO:0006355
Vium3653g00001 317 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 22 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3653g00001 Vium-Chr3653 370 4252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3653g00001 1 188 Glycosyltransferase AT4G32410 55.851 1.11e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium3653g00001 zf-UDP 1.2e-36 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3653g00001 K10999 - gmx:548004 552.747