Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3652g00003 ATGCACCGAAGAGCCCCAATCCCTCGTCTCCTCCTCAATAATGTCTCATGTATGAGAAATGCACAGCAAATTCTGCGTCATGTGAATGTGTCTCTCCATGATGGAGGGGCGCTTGTGCTAACAGGCGCAAATGGCTCGGGGAAGACAACTTTCCTGCGTATGTTAGCTGGGTTTTCTCGTCCTTCTGCTGGCGAAATACTTTGGAATGGCCATGACATACAACAATCTGCAATATTCCATCAGTATAAGCTTCAACTTAACTGGCTCTCTCTCAAGGACGCCATTAATGATAAGTTCACAGTTCTCAACAATGTACAATGGTTTGAACTTCTTGAGAACAAGGAAGGGAAGGCTTTGGCTGCAGTGGAATTGATGGGACTAGGAAAATTAGCTAATGAAAAACCAAGGATGCTTTCTATGGGCCAGCGTAAAAGACTACAACTTGCCAGGTTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCGGTTGCATTAGACGATGAAGGAGTAAAGTTACTTGAGTATATCATCGCAGAACATAGGAAACACGGAGGAATTGTGATTGTGGCGACTCATCTACCCATCGAGATAGAAGATTCCATGTTTTTGAAACTTCCACCTAGGTTTCCCAGGAGGATGACCCACGTGGATATGCTTGATCGGGCGGATATCAGTTAA 687 0.4527 MHRRAPIPRLLLNNVSCMRNAQQILRHVNVSLHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHDIQQSAIFHQYKLQLNWLSLKDAINDKFTVLNNVQWFELLENKEGKALAAVELMGLGKLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKHGGIVIVATHLPIEIEDSMFLKLPPRFPRRMTHVDMLDRADIS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3652g00003 228 Gene3D - 4 206 IPR027417 -
Vium3652g00003 228 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 222 IPR005895 GO:0017004|GO:0022857
Vium3652g00003 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 199 IPR027417 -
Vium3652g00003 228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 227 IPR003439 GO:0005524
Vium3652g00003 228 SMART AAA_5 34 222 IPR003593 GO:0016887
Vium3652g00003 228 NCBIfam heme ABC exporter ATP-binding protein CcmA 12 207 IPR005895 GO:0017004|GO:0022857
Vium3652g00003 228 Pfam ABC transporter 25 165 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3652g00003 Vium-Chr3652 4187 5929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3652g00003 23 177 Calmodulin-binding Proteins AT2G36910 27.485 1.01e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3652g00003 - - gmx:100796586 417.157