Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3649g00001 ATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGATCTTACTGGGTGCCCTTGATTGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGGACTACCAATGCAAAAACGATGGGACCTGTGCCATTGCCAACCAAGAGGCGAGTCTACTGTGTTCTTAAATCCCCTCACGTACACAAGGATGCTCGGTTTCATTTCGAGATCAGAACTCACCAGCGTCTCATTGATATACTGTATCCTACTGCTCAAACAATAGATTCACTTATGCAACTAGATCTTCCTGCTGGTGTTGATGTTGAGGTCAAGCTCTAG 312 0.4455 MAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3649g00001 103 Pfam Ribosomal protein S10p/S20e 8 102 IPR027486 -
Vium3649g00001 103 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 2 103 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vium3649g00001 103 NCBIfam 30S ribosomal protein S10 5 102 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vium3649g00001 103 SMART Ribosomal_S10_2 8 102 IPR027486 -
Vium3649g00001 103 Hamap 30S ribosomal protein S10 [rpsJ]. 4 103 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vium3649g00001 103 Gene3D Ribosomal protein S10 domain 1 103 IPR036838 -
Vium3649g00001 103 FunFam 30S ribosomal protein S10 1 103 - -
Vium3649g00001 103 SUPERFAMILY Ribosomal protein S10 6 103 IPR036838 -
Vium3649g00001 103 ProSitePatterns Ribosomal protein S10 signature. 30 45 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium3649g00001 103 PRINTS Ribosomal protein S10 family signature 41 56 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vium3649g00001 103 PRINTS Ribosomal protein S10 family signature 62 76 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vium3649g00001 103 PRINTS Ribosomal protein S10 family signature 6 19 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3649g00001 6 103 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.313 2.58e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3649g00001 K02946 - qsu:111986192 209.92