Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3646g00016 | ATGGCGCAGCTTCCCTGTGACCCCGACGGCGTTTGCATGCGATGCAAGGAGAAACCCCCTTCTTCCCAAACCCTCACTTGCCGGACCTGCGCCACTCCATGGCATCTTTCTTGCCTCACCGAGCCTCCGGTCTCCGATTCTGACACCCACTGGGAGTGTCCTGACTGCTCTGACCTCTCCAATCCTGTCCCCGTCGCTCCCTCCGACGGCATTCTCCTCGCCGTCCGCGATATTCAGTTAGACACGTCGCTCTCCGAAAAACAAAAGGCTAAAAAATGCCAAGAAGTGCTCGCCGGTACCTCGGATCTGTCTAAAGACAAAAATTCCGATATCTTCGACGGGAGTTTCAACTGCTCTATTTGCATGCAACTGCCTGATAGGCCTGTAACGACACCGTGTGGGCATAATTTCTGCTTGAAGTGCTTTGAGAAATGTATCACTCAGGGAAGGAACAATTGTGCGAATTGTCGAACTCCAATTCCTGCAAAGATGTATAGTCAGCCGAGAATTAACTCTCAGTTGGCTATGGCTATTCGATTGGCTAAGGCAGCGAGGACTGGGCAGTCTTCTGGGCCTCCTAGAGTGCATCACTTTGTGCGCAATCAGGATCGCCCAGATACTGCCTTTACCACTGATCGGGCGAAGAAAACTGGAAAAGCTAATGCTTGTTCTGGTAAGATTTTTGTTACGGTTCCACCCGACCATTTTGGTCCTATTCCAGCTGAAAACGATCCCAAGAGGAATCGCGGGGTTTTGGTTGGTGACACGTGGGAGGACAGGATGGAATGTCGGCAATGGGGCGCTCATTTACCTCATGTAGCTGGTATCGCTGGACAGAGTAGTTATGGTGCCCAATCTGTTGCGCTCTCTGGTGGTTACGTGGATGATGAGGATCATGGGGAATGGTTCCTTTATACTGGCAGTGGTGGAAGAGATCTGAGTGGAAACAAGCGCACGAACAAACTTCAATCTTTTGACCAGAAGTTTGAAAACATGAATGAAGCTTTGAGACAAAGCTGCCGAATGGGTTATCCTGTTCGTGTTGTAAGGTCGCATAAGGAAAAACGTTCTGCTTATGCACCCGAAGCTGGGGTGCGTTATGATGGGGTCTATAGAATAGAAAAATGCTGGCGCAAGGATGGAATTCAAGGCTGTAAGGTTTGTAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCGCCGTGGACAAGTGATGAATCTGGAGACCTTCCACGCCCACTACCTGAGATCGAGGAGTTAATTGATGCAATTGATATAACAGAAAGGAAGGACGAACCATCGTGGGATTATGATGAAGAAAAGGAGTGCTGGTTGTGGAAGAAGCCTCCCCCAGAAAGCAGGAAATCAATGGACTCTAGGTCTGGAGATGGTTCAACAGTCAGAGTTAAACGGAAGCCGGACATCGCGTCTGAGAGAGAAAAGCTGCTGAAAGGGTTTCGTTGCGGAATATGCCGCAAGGTGATGCAGTACCCCATTACTACACCTTGTGGTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTGCCGGAAAAAGTTTGATGAGGGAAAGGTCACGTGAAGGTGGTCGCAGTTTGCGAGCACAAAAGAATGTTAAGAAATGCCCATCATGTAGTAATGACATTGCTGACTATCTTGAGAATCCGCAGGTTAATAGGGAAATGATGACTTTGATAGAATCATGGGGAAAGAAGCCTGAAGAAGAAAACCCTGAGGAGTCAGACGAGAATGATGAAAATGATGATAATGATGATAACGATGAAAGTCTGGAGGATGCAGCCGAGGTTTCAAAACCTTCTGATTATGGTGATAAGGTTCTGGAGGAAATTAAGGACAATGATCTGAATCAGCAACACAAGCGCAGGAAGGAGTGA | 1896 | 0.4821 | MAQLPCDPDGVCMRCKEKPPSSQTLTCRTCATPWHLSCLTEPPVSDSDTHWECPDCSDLSNPVPVAPSDGILLAVRDIQLDTSLSEKQKAKKCQEVLAGTSDLSKDKNSDIFDGSFNCSICMQLPDRPVTTPCGHNFCLKCFEKCITQGRNNCANCRTPIPAKMYSQPRINSQLAMAIRLAKAARTGQSSGPPRVHHFVRNQDRPDTAFTTDRAKKTGKANACSGKIFVTVPPDHFGPIPAENDPKRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRQSCRMGYPVRVVRSHKEKRSAYAPEAGVRYDGVYRIEKCWRKDGIQGCKVCRYLFVRCDNEPAPWTSDESGDLPRPLPEIEELIDAIDITERKDEPSWDYDEEKECWLWKKPPPESRKSMDSRSGDGSTVRVKRKPDIASEREKLLKGFRCGICRKVMQYPITTPCGHNFCKACLEGAFAGKSLMRERSREGGRSLRAQKNVKKCPSCSNDIADYLENPQVNREMMTLIESWGKKPEEENPEESDENDENDDNDDNDESLEDAAEVSKPSDYGDKVLEEIKDNDLNQQHKRRKE | 631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3646g00016 | 631 | ProSiteProfiles | YDG domain profile. | 246 | 394 | IPR003105 | - | |
| Vium3646g00016 | 631 | MobiDBLite | consensus disorder prediction | 448 | 472 | - | - | |
| Vium3646g00016 | 631 | SUPERFAMILY | FYVE/PHD zinc finger | 5 | 62 | IPR011011 | - | |
| Vium3646g00016 | 631 | ProSiteProfiles | Zinc finger PHD-type profile. | 9 | 59 | IPR019787 | - | |
| Vium3646g00016 | 631 | CDD | RING-HC_ORTHRUS_rpt1 | 115 | 161 | IPR047498 | - | |
| Vium3646g00016 | 631 | MobiDBLite | consensus disorder prediction | 578 | 598 | - | - | |
| Vium3646g00016 | 631 | ProSitePatterns | Zinc finger RING-type signature. | 503 | 512 | IPR017907 | - | |
| Vium3646g00016 | 631 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 474 | 600 | IPR013083 | - | |
| Vium3646g00016 | 631 | MobiDBLite | consensus disorder prediction | 569 | 631 | - | - | |
| Vium3646g00016 | 631 | Pfam | SAD/SRA domain | 249 | 397 | IPR003105 | - | |
| Vium3646g00016 | 631 | SMART | ring_2 | 12 | 56 | IPR001841 | - | |
| Vium3646g00016 | 631 | SMART | ring_2 | 118 | 156 | IPR001841 | - | |
| Vium3646g00016 | 631 | SMART | ring_2 | 488 | 545 | IPR001841 | - | |
| Vium3646g00016 | 631 | Pfam | RING-type zinc-finger | 488 | 529 | IPR027370 | - | |
| Vium3646g00016 | 631 | SMART | G9a_1 | 241 | 398 | IPR003105 | - | |
| Vium3646g00016 | 631 | ProSitePatterns | Zinc finger PHD-type signature. | 12 | 56 | IPR019786 | - | |
| Vium3646g00016 | 631 | ProSiteProfiles | Zinc finger RING-type profile. | 488 | 546 | IPR001841 | - | |
| Vium3646g00016 | 631 | MobiDBLite | consensus disorder prediction | 599 | 631 | - | - | |
| Vium3646g00016 | 631 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 184 | IPR013083 | - | |
| Vium3646g00016 | 631 | SUPERFAMILY | RING/U-box | 111 | 165 | - | - | |
| Vium3646g00016 | 631 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 65 | IPR013083 | - | |
| Vium3646g00016 | 631 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 217 | 412 | - | - | |
| Vium3646g00016 | 631 | SUPERFAMILY | RING/U-box | 482 | 571 | - | - | |
| Vium3646g00016 | 631 | Pfam | Zinc finger, C3HC4 type (RING finger) | 117 | 161 | - | - | |
| Vium3646g00016 | 631 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 2 | 589 | IPR045134 | - | |
| Vium3646g00016 | 631 | SUPERFAMILY | PUA domain-like | 220 | 413 | IPR015947 | - | |
| Vium3646g00016 | 631 | Gene3D | - | 217 | 412 | IPR036987 | - | |
| Vium3646g00016 | 631 | ProSiteProfiles | Zinc finger RING-type profile. | 118 | 157 | IPR001841 | - | |
| Vium3646g00016 | 631 | SMART | PHD_3 | 11 | 57 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3646g00016 | Vium-Chr3646 | 59879 | 63303 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3646g00016 | 3 | 575 | C2H2 Transcription Factor Family | AT5G39550 | 60.951 | 0.0 | 728 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3646g00016 | K10638 | - | gmx:100786796 | 1009.59 |