Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3646g00014 ATGGCAAGCTTTATCCAACAAAAGGGTAGTATTGAAAGTGAGTTGAGTATGATCAACATAGACCCTCTTAACTGGGGTGAGGCAGCAGAATCACTTAAGGGTAGCCACTTGGAGGAGGTGAAAAGGATGGTGGGGGAGTACCGGAAGGCAGTGATCCATCTGGGTGGAGAGGAGAAACTTACAGTGTCAATGGTGGCTGCTGTTGCTAACCATTACTTACAGGCTAAGGTTGACCTCTCAGAGTCTGCAAGAGAAGGCGTTGAAGCCAGCTGCAAATGGGTCATGGATAACATCGACAAAGGCACTCCCATTTATGGTGTTACCACTGGTTTTGGTGCTTCCTCCAACAGGCAAACTCAAGAAGGCCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAATTGCGCAATATTTGGCTACAAAACAGAGTTGTCTCATATACTGCCGAAATCAGCAACCAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCAGGAATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACAACAATGTCACCCCAGTCTTGCCGTTACGTGGTACACTTACTGCGTCTGGTGATCTAATTCCTCTGTCATACATTGTTGCATTGCTAACGGGTAGGCGAAACAGTAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAATGCTAAGGAAGCTTTCCATTTAGCAGGTCTACAAGGTGGGTTCTTTGAGTTGAAGCCCAAAGAAGGTCTTGCTCTTGTAAATGGTACAGCCGTTGGGTCTGGCGTAGCTTCTATGGTGCTTTTTGAGGCAAACGTATTAGCTTTATTGGCGGAAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGAAAGCCAGAATTTACACATCACCTTATACATAAGCTGAAGTACCACCCAGGTCAGATTGAAGCTGCCGCTATTATGGAACACATTCTAGATGGAAGCTCTTATGTCAAGAATGCTAAACTGCAACAGCCAGATCCATTGCAGAAGCCTAAAAAAGATCGTTATGCTCTTGTAACTTCTCCTCAATGGCTTGGTCCACAGATTGAAATCATCCGATTTTCGACCAAATCAATCGAAAGGGAAATAAACTCAGTAAATGACAATCCCTTGATTGATGTCACAAGGGATAAAGCTCTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCGCAATTCACCGAACTAGACAATGATTTGTATAGTAATGGGCTACCATCAAACCTGTCCGTTGGTAGAAATCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTAGCAAATCCGGTAACTAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCGGCTCAGAAAACTGTCGAAGCCATAGAGATATTAAAGCTTATGTCTTCCACTTATCTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTCAAGAACACTGTCAAGAATACTGTAAGCAGAGTTGCACTGAAAACATTAGTTACTGAAGACAAAGAAGAAATTAACCCATTTCGACTCTCTGAGGAAGAGTTGCTTAAAGTGGTCGATAGAGAATATGTACTTTCATACATTGATGATCCCTTAAATGTTCGGTACCCATTGATGGCAAAACTAAAGCAGGTACTTTATGAGCAAGCACACAGCAGTGTCATTAATGACAAGAATGTGAGTTTGTTGACTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAAAGGAAATTGAAAGTGCAAGGGTGGCTTATGAGAATGGCAATCCAGCAATTCCAAACAGAATCAAGGAGTGCAGGTCATATCCACTGTACAAATTTGTGAGGGAGGAGTTGGAGATAGGGTTGCTCACAGGTGAAAAAGCTCTGTCACCAGATGAAGAATTTGAAAAAGTATATACAGCCATGTGTCAAGCAAAGATAATTGACCCAATTCTGGAATGTCTAGGAGATTGGAACGGGGTTCCCATCCCAATATAA 2136 0.426 MASFIQQKGSIESELSMINIDPLNWGEAAESLKGSHLEEVKRMVGEYRKAVIHLGGEEKLTVSMVAAVANHYLQAKVDLSESAREGVEASCKWVMDNIDKGTPIYGVTTGFGASSNRQTQEGLALQKEMVRFLNCAIFGYKTELSHILPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPVLPLRGTLTASGDLIPLSYIVALLTGRRNSKAVGPSGESLNAKEAFHLAGLQGGFFELKPKEGLALVNGTAVGSGVASMVLFEANVLALLAEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQPDPLQKPKKDRYALVTSPQWLGPQIEIIRFSTKSIEREINSVNDNPLIDVTRDKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELDNDLYSNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAQKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLVTEDKEEINPFRLSEEELLKVVDREYVLSYIDDPLNVRYPLMAKLKQVLYEQAHSSVINDKNVSLLTFEKIGAFEDELKSLLPKEIESARVAYENGNPAIPNRIKECRSYPLYKFVREELEIGLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLGDWNGVPIPI 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3646g00014 711 Gene3D - 13 259 IPR024083 -
Vium3646g00014 711 Pfam Aromatic amino acid lyase 60 525 IPR001106 -
Vium3646g00014 711 PANTHER HISTIDINE AMMONIA-LYASE 19 711 IPR001106 -
Vium3646g00014 711 SUPERFAMILY L-aspartase-like 21 711 IPR008948 GO:0003824
Vium3646g00014 711 Gene3D - 525 646 IPR023144 -
Vium3646g00014 711 CDD PAL-HAL 60 522 IPR001106 -
Vium3646g00014 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Vium3646g00014 711 FunFam Phenylalanine ammonia-lyase 12 259 - -
Vium3646g00014 711 Gene3D Fumarase/aspartase (Central domain) 260 706 - -
Vium3646g00014 711 NCBIfam phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3646g00014 Vium-Chr3646 39007 42066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3646g00014 9 711 Monolignol Biosynthesis Gene Families AT2G37040 71.206 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3646g00014 K10775 - gmx:100787872 1206.82