Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3646g00013 ATGCCTGCACAAGCTCTGCTATCATCTTCATCTCTTGTCCTCTCAGCGGAGGCTGCCAGACAGACTCTCGGACCACGATCACACCAATCTCCCTTTGCCTTCTCCCGAAAAGCCTCCTTCATTGTTAAGGCAGCTTCTACTCCCCCTGTCAAGCAAGGAGCAGACAGACCTTTATGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCTGGTGACTATGGATTTGACCCTCTTGGACTTTCAGACCCTGAAGGAACAGGAGGGTTCATCGAGCCGAAATGGCTAGCGTATGGTGAGATCATCAATGGTCGTTATGCAATGTTGGGTGCAGTTGGTGCCATAGCACCTGAAATTCTCGGCAAGGCTGGTCTGATCCCTCAGGAGACAGCACTGCCATGGTTCAGAACCGGTGTGATCCCACCTGCAGGAACATACAACTACTGGGCAGACTCGTACACGCTCTTTGTGTTTGAGTTGGCACTGATGGGATTTGCAGAGCACAGAAGATTCCAAGACTGGGCGAAACCAGGGTCTATGGGGAAACAATACTTCTTAGGACTAGAAAAAGGTCTTGGAGGTTCCGGTGATCCAGCATACCCCGGAGGACCTTTGTTTAACCCTCTTGGTTTTGGCAAGGATGAGAAGTCGTTGAAGGATTTGAAGCTGAAGGAAGTCAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTGTTCAAGCTCTTGTGACAGGTGTTGGTCCATACCAGAACCTCCTAGATCATCTTGCTGACCCTGTTCACAACAACATCCTGACCAGTCTCAAGTTCCACTGA 831 0.4934 MPAQALLSSSSLVLSAEAARQTLGPRSHQSPFAFSRKASFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVIPPAGTYNYWADSYTLFVFELALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3646g00013 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
Vium3646g00013 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 24 271 IPR001344 GO:0009765|GO:0016020
Vium3646g00013 276 FunFam Chlorophyll a-b binding protein, chloroplastic 57 275 - -
Vium3646g00013 276 SUPERFAMILY Chlorophyll a-b binding protein 55 272 - -
Vium3646g00013 276 Pfam Chlorophyll A-B binding protein 67 246 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3646g00013 Vium-Chr3646 37388 38735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3646g00013 19 276 Chloroplast and Mitochondria Gene Families AT1G61520 85.659 4.34e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3646g00013 K08909 - gmx:100808379 515.383