Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3646g00009 | ATGGAGATGCAACAGCTCCTCAGTATGGGCTTCCCCGATGAGTTAGCCGCCCAAGCCTTGGCCGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAACGCCGCCAACACCTCCACATTCCAGCCCAAACTTGATCGCTTCTTCCATTTTTCTCAATCCCCCACACCTCCACAATCGCAATCACAGGAGGAAGAAGAAGACGAAGAACCTTCCAAACGTCTCAGGCCTTCTACACTTTCTGCGCAGAATCCACAGCCACAGCAACAAAACTGGCCTCCTTTTTTCTTCAAAACCGCAGAGAAGAAACACGCCAACACTCACATTCACCAACCCTTGTACGAGCGCTTGCGTCCCAGAACCCTCGACGACGTCGTAGGTCAGGACCATCTCCTCGCCGCCAACTCCCTTCTTCGCTCCGCAATCCAACGCAACCGCCTCCCCTCCATCCTCTTGTGGGGTCCACCTGGTACTGGTAAGACCACTATCGCCAAAGCCATCGTTAAATCTTCAACCTCAACACGTTACCGGTTTGTCTCCTTATCCGCCGTCACTAGTGGCGTTAAGGACGTGAGGGACGCCGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAATCCACCGTTCTCTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAGCAGGACTCTTTCTTACCTGTCATTGAAGACGGCAGCATTGTATTCGTTGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATTACACCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGCGCTGTCAGTGACACTGACAGAGGATTGATGCAAAGCGCGGGGATTCAAGTTGATGTTAAAGAGGACGTTGTTGATTATATAAGCAACAATTGTGATGGAGATGCTCGGGTGGCCCTTAATGCTCTGGAGATTGCAGCTGTTACAGCAGCAGCGAGGGTACAACATGGTAAACAAAAGGAAGAAGGGGTGGAAGATCTTCACACAAACGAGGATTATAAGGTTGCTGCTGCTGTTGTTAGTGTTGATGATGCAAGGGAGGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCTGGGGAAGAGCACTATAATCTAATCAGCGCGCTGCACAAGTCTATGAGGGGAAGCGATGCGAATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGAGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGATTCGCGAGTGAGGATGTTGGTTTGGCTGACCCATTAGCTCTTAATCAGGCTGTTTCTTGTTACCAAGCTTGCCACTTCTTGGGAATGCCCGAATGCAATGTAATTCTTGCACAGTGTGTTACTTACTTGGCCTTGGCACCTAAATCTGTTGCGGTTTATCGAGCCTTAGGGGCCGCGCAGAAGGCAGTGAGGGAATCTGCTGGACAGAATGAGGGGGTGCCTCTACATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGCTAAGGGATACATCTATCCCCCGGACAACCCTTCCTCCACACAGACTTACTTGCCACCTTCACTTCAAGGCTACAAGTTCCTTGATTGGCCTGACAGGATTCCTTATGATGGATGA | 1671 | 0.5027 | MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNAANTSTFQPKLDRFFHFSQSPTPPQSQSQEEEEDEEPSKRLRPSTLSAQNPQPQQQNWPPFFFKTAEKKHANTHIHQPLYERLRPRTLDDVVGQDHLLAANSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVKSSTSTRYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQSTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVSDTDRGLMQSAGIQVDVKEDVVDYISNNCDGDARVALNALEIAAVTAAARVQHGKQKEEGVEDLHTNEDYKVAAAVVSVDDAREALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVTYLALAPKSVAVYRALGAAQKAVRESAGQNEGVPLHLRNAPTKLMKEIGYAKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDRIPYDG | 556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3646g00009 | 556 | Pfam | ATPase family associated with various cellular activities (AAA) | 157 | 267 | IPR003959 | GO:0005524|GO:0016887 | |
| Vium3646g00009 | 556 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 116 | 350 | IPR027417 | - | |
| Vium3646g00009 | 556 | SUPERFAMILY | UBA-like | 3 | 40 | IPR009060 | GO:0005515 | |
| Vium3646g00009 | 556 | Gene3D | - | 107 | 271 | IPR027417 | - | |
| Vium3646g00009 | 556 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 552 | 556 | - | - | |
| Vium3646g00009 | 556 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 161 | 180 | - | - | |
| Vium3646g00009 | 556 | CDD | AAA | 133 | 266 | - | - | |
| Vium3646g00009 | 556 | Gene3D | - | 273 | 347 | - | - | |
| Vium3646g00009 | 556 | Gene3D | - | 373 | 476 | - | - | |
| Vium3646g00009 | 556 | FunFam | AAA-type ATPase family protein | 273 | 347 | - | - | |
| Vium3646g00009 | 556 | MobiDBLite | consensus disorder prediction | 83 | 100 | - | - | |
| Vium3646g00009 | 556 | Gene3D | - | 2 | 50 | - | - | |
| Vium3646g00009 | 556 | Pfam | AAA C-terminal domain | 300 | 398 | IPR032423 | - | |
| Vium3646g00009 | 556 | FunFam | Putative AAA family ATPase | 373 | 476 | - | - | |
| Vium3646g00009 | 556 | MobiDBLite | consensus disorder prediction | 56 | 100 | - | - | |
| Vium3646g00009 | 556 | FunFam | Replication-associated recombination protein A | 109 | 272 | - | - | |
| Vium3646g00009 | 556 | Pfam | MgsA AAA+ ATPase C terminal | 399 | 545 | IPR021886 | - | |
| Vium3646g00009 | 556 | Pfam | UBA/TS-N domain | 4 | 35 | IPR015940 | - | |
| Vium3646g00009 | 556 | CDD | HLD_clamp_RarA | 273 | 373 | - | - | |
| Vium3646g00009 | 556 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 1 | 38 | IPR015940 | - | |
| Vium3646g00009 | 556 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 383 | 549 | IPR008921 | GO:0003677|GO:0006260 | |
| Vium3646g00009 | 556 | PANTHER | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER | 1 | 551 | - | - | |
| Vium3646g00009 | 556 | Gene3D | - | 477 | 552 | - | - | |
| Vium3646g00009 | 556 | SMART | AAA_5 | 153 | 273 | IPR003593 | GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3646g00009 | Vium-Chr3646 | 23593 | 25426 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3646g00009 | 119 | 351 | Core DNA Replication Machinery Family | AT1G77470 | 27.197 | 7.30e-14 | 71.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3646g00009 | K07478 | - | gmx:100799257 | 898.271 |