Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3644g00022 ATGACATGCACGTCGTGTTCCTCCACTGTCGAAACTGCACTTCAAGCAATCCAAGGAGTGGTGAAAGCTCAAGTGGCCCTTGCAACTGAGGAAGCTGAAGTTCACTACACTCCAAACGTTGTCACCTACAACCAAATCTTGGAAGCAGTAGAAAACACTGGTTTTCAAGCCACGCTTATAAGCACAGGTGAAGACATGAGCAGAATAGACCTTCAGGTTGAGGGAGTAAGGACGGGTCGTTCCATGAGAATAATTGAAAGTTCTCTTCAAGCACTTCCTGGGGTCGAAGGTGTAGAAACACACCCTTTGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACTTGACAGGACCAAGAAATTTCATTAACGTGATTCAGGAAACTGGGTCTAGGCGTTTCAAGGCAATGATTTTCCCGGAAGAAGGAGGGAAAAGGAATAGTCATAGGAGGGAGGAAATCAAGCAATACTATAGATCCTTCTTGTGGAGTTTGGTGTTTACTATTCCTGTGTTTCTAACCTCCATGGTGTTTATGTATATCCCTGGAATTAAGAATGGACTAGATGCCAAAGTTGTTAAAATGCTTACAGTGGGGGAGATCATAAGATGGGTGCTTTCTACACCAGTGCAGTTTGTTATAGGGAGGAGATTTTACTCTGGTGCTTACAAAGCATTACGCATTGGCTCTCCCAACATGGATGTTTTGATTGCCCTGGGGACAAATACAGCGTACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTGATGGTTTCAAGGGTACTGATTTCTTTGAGACCAGTGCTATGCTTATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACGTTGGATAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGATAGCAGGTTGATTCAGAAGAATGATGTTATTAAGATCATTCCCGGTGCAAAAGTGGCTTCCGATGGATTGGTCATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACTGTGAATGAAAATGGAGTGTTGCACATTAAGGCTACATGGGTGGGATCAGAGAGTGCCCTTGCTCAGATTGTCAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCTATGGTTATTTTAATGTCATTTTCAACTTGGCTTGCCTGGTTTATAGCTGGAAGAGTTCGTGCTTACCCCAAGTCCTGGATACCATCTTCTATGGATAGCTTTCAGCTTTCTTTGCAATTCGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCGACTGCAGTCATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTTACAAATATGGTACTCCGAGAATTCTATGAACTTGTGGCAGCAGCTGAGGTGAATAGTGAGCATCCGCTGGCGAAGGCTGCTGTAGAGTATGCTAAAAGACTGAGAGATGAAGAGAACCCCATTTGGCCAGAGGCACGGGATTTTGTGTCGATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAATAAGGAAATACTTGTGGGTAACAAGACCTTGATGGCGGACCACAATGTTGCACTTCCTATTGATGCTGAAGAGATACTGGCAGAAGCGGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATAAATAGGGAAGTTGTTGGGATTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATTTCCATTCTCAAGTCTATGAAAGTCAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCCAATTCTATAGCAAAGGAAGTTGGAATTGAAACTGTTATTGCTGAAGCCAAACCTGAACAGAAGGCTGAGCAAGTGAAGAACTTGCAGGCTTCTGGGCACAAGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGGATGGCAATTGGTGCTGGTACAGACATTGCTATTGAAGCTGCTGATATTGTCCTGATGAAGAGCAATTTGGAGGATGTCATAACTGCCATTGATCTTTCCAGAAAAACGTTTTCTCGTATCCGTCTCAACTACATATGGGCTTTGGGCTATAATCTGCTTGGAATTCCAATTGCTGCTGGAGCTCTTTTTCCCTCTACACGATTTCGGTTGCCACCGTGGGTTGCCGGGGCTGCCATGGCTGCGTCTTCTGTCAGTGTAGTTTGCTGTTCTTTACTGTTGAAGTATTATAGGAGACCCAAGAAGTTGAACAATCTTGAGATACGGGGCATAAGCATTGAGTGA 2559 0.4451 MTCTSCSSTVETALQAIQGVVKAQVALATEEAEVHYTPNVVTYNQILEAVENTGFQATLISTGEDMSRIDLQVEGVRTGRSMRIIESSLQALPGVEGVETHPLLNKVSLSYKPDLTGPRNFINVIQETGSRRFKAMIFPEEGGKRNSHRREEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKNGLDAKVVKMLTVGEIIRWVLSTPVQFVIGRRFYSGAYKALRIGSPNMDVLIALGTNTAYFYSVYSVLRAATSDGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATWVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPMVILMSFSTWLAWFIAGRVRAYPKSWIPSSMDSFQLSLQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLFTNMVLREFYELVAAAEVNSEHPLAKAAVEYAKRLRDEENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKTLMADHNVALPIDAEEILAEAEAMAQTGIIVSINREVVGILAVSDPLKPAAQEVISILKSMKVRSIMVTGDNWGTANSIAKEVGIETVIAEAKPEQKAEQVKNLQASGHKVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLNNLEIRGISIE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3644g00022 852 SFLD p-type atpase 501 775 IPR044492 -
Vium3644g00022 852 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 848 - -
Vium3644g00022 852 CDD HMA 1 58 IPR006121 GO:0046872
Vium3644g00022 852 CDD P-type_ATPase_Cu-like 158 833 - -
Vium3644g00022 852 NCBIfam heavy metal translocating P-type ATPase 232 832 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium3644g00022 852 ProSitePatterns E1-E2 ATPases phosphorylation site. 521 527 IPR018303 -
Vium3644g00022 852 PRINTS Copper-transporting ATPase 1 signature 215 240 - -
Vium3644g00022 852 PRINTS Copper-transporting ATPase 1 signature 160 181 - -
Vium3644g00022 852 PRINTS Copper-transporting ATPase 1 signature 195 215 - -
Vium3644g00022 852 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Vium3644g00022 852 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Vium3644g00022 852 Gene3D - 287 409 - -
Vium3644g00022 852 Pfam E1-E2 ATPase 318 497 - -
Vium3644g00022 852 FunFam Probable copper-transporting ATPase HMA5 617 780 - -
Vium3644g00022 852 SUPERFAMILY Calcium ATPase, transduction domain A 319 405 IPR008250 -
Vium3644g00022 852 SFLD Haloacid Dehalogenase 501 775 - -
Vium3644g00022 852 SUPERFAMILY HMA, heavy metal-associated domain 62 130 IPR036163 GO:0046872
Vium3644g00022 852 Gene3D - 486 780 IPR023214 -
Vium3644g00022 852 SUPERFAMILY Calcium ATPase, transmembrane domain M 261 798 IPR023298 -
Vium3644g00022 852 Gene3D - 1 64 - -
Vium3644g00022 852 FunFam Copper-transporting ATPase 1, putative 287 409 - -
Vium3644g00022 852 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Vium3644g00022 852 NCBIfam HAD-IC family P-type ATPase 272 804 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium3644g00022 852 Gene3D - 67 129 - -
Vium3644g00022 852 FunFam ATPase copper transporting beta 1 62 - -
Vium3644g00022 852 Pfam Heavy-metal-associated domain 1 55 IPR006121 GO:0046872
Vium3644g00022 852 SUPERFAMILY HAD-like 518 829 IPR036412 -
Vium3644g00022 852 Pfam haloacid dehalogenase-like hydrolase 515 737 - -
Vium3644g00022 852 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Vium3644g00022 852 PRINTS P-type cation-transporting ATPase superfamily signature 723 742 - -
Vium3644g00022 852 PRINTS P-type cation-transporting ATPase superfamily signature 355 369 - -
Vium3644g00022 852 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Vium3644g00022 852 PRINTS P-type cation-transporting ATPase superfamily signature 746 758 - -
Vium3644g00022 852 PRINTS P-type cation-transporting ATPase superfamily signature 519 533 - -
Vium3644g00022 852 ProSiteProfiles Heavy-metal-associated domain profile. 67 133 IPR006121 GO:0046872
Vium3644g00022 852 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Vium3644g00022 852 Gene3D - 603 654 IPR023299 GO:0000166
Vium3644g00022 852 Gene3D - 526 602 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3644g00022 Vium-Chr3644 121852 125993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3644g00022 1 852 Primary Pumps ATPases AT1G63440 78.855 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3644g00022 K17686 - gmx:100810141 1543.48