Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3644g00017 ATGGATGGGAGAGAGGTTATGTCATTTTCTGGTGGCTCACCTTCATATTACATGCATAGAGGAGGGGTTGGAGGGTCTGGTTCTGGAAATCTTAGTGGGGGAGGGGAGTTCCAAGCTGCCCCTGGGTTCAGACCTTTGTCAAACCCTGCCATTCAAGCTGAGCCAAATTCAAGGGGTCAGGGAGGTGGTTCTGTAGGGTCTAGCTCCATATTTTCTGTGGAGCCTCCTCACGGTCGTGCCAATTTTAACCATGACATCGGCATTGGCAGTGGGGCACCTTCAAGTGAGCCTGTTAAGAAGAAAAGAGGGAGACCCCGTAAATATGGTCCTGATGGAACAGTTTCTTTGAGATTGTCTCCAATGTCTGCCCCCGCTAACTCCACCCAGGGTGGAAGTGCAACCACCCTTTCTCAGAAAAAGGGAAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAATTAGCTGCATTAGGTGAATGGATGAATAGTTCAGCAGGCTTGGCCTTTTCACCTCATGTTGTCACTATAGGAGTTGGGGAGGACATTGTGGCCAAGTTATTATTGTTATCTCAACAGAGACCAAGGGCTCTTTGTGTTTTGTCAGGCACTGGAACAGTTTCTTCAGTCACTCTACGACAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTATTGTGCAGCTTTGTGTATGGTGGCTCAAAGACCAAGCCTAAACAAGGGCTCACTATCACAAATGAAAGTGGTGAGCACCCTCAGCATAATGACAAGATGGCTACACCAGCCAGTACTCCACCTGGTCATAATCAAAACTACCTCCCTTCTGGTTCACACATTTGGCCTGGATCTCAACCGGCAGAGCTGAAAAACACGCAAACCCACACTGGCATTGACTTGACTCGTGGCTGA 1071 0.4865 MDGREVMSFSGGSPSYYMHRGGVGGSGSGNLSGGGEFQAAPGFRPLSNPAIQAEPNSRGQGGGSVGSSSIFSVEPPHGRANFNHDIGIGSGAPSSEPVKKKRGRPRKYGPDGTVSLRLSPMSAPANSTQGGSATTLSQKKGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTIGVGEDIVAKLLLLSQQRPRALCVLSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKPKQGLTITNESGEHPQHNDKMATPASTPPGHNQNYLPSGSHIWPGSQPAELKNTQTHTGIDLTRG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3644g00017 356 Gene3D - 171 305 - -
Vium3644g00017 356 MobiDBLite consensus disorder prediction 119 141 - -
Vium3644g00017 356 MobiDBLite consensus disorder prediction 291 356 - -
Vium3644g00017 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 289 - -
Vium3644g00017 356 CDD DUF296 171 283 IPR005175 -
Vium3644g00017 356 MobiDBLite consensus disorder prediction 50 71 - -
Vium3644g00017 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 284 IPR005175 -
Vium3644g00017 356 MobiDBLite consensus disorder prediction 1 153 - -
Vium3644g00017 356 ProSiteProfiles PPC domain profile profile. 163 305 IPR005175 -
Vium3644g00017 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 315 IPR039605 GO:0003680
Vium3644g00017 356 MobiDBLite consensus disorder prediction 311 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3644g00017 Vium-Chr3644 103298 108055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3644g00017 1 356 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.837 9.33e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3644g00017 - - gmx:100813888 515.383