Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3644g00007 ATGTCTGAAAGCAATAAATCACCCAAAAATGATCATCAGTCCATAAAATATTGGCGGATTCAACAGGCAGGAGCGTCCACTCAGACGGATCTTTCGGGTGTAGATTATTCGCCTTCTCTTTCCAAGAACGAGAGTAAGCAACAGTATGGAAGTTGTCAACCGAAGTCCCCTCAGATACTGAGCACAGCTCAGCTCATCTCTGCAATTGGTCAGGTATGCGATTCTGCAAGTCAATCGCTTTCGGTTTTACTCCCAAAGGAAAATTTGAATCAGGATGATAACGGATTCTCAAAAGAGAAACTTCTGGATAACATTGGAGAGAGAAAGAATAACCTGGTATATACTTCGAATGGCACTAAATTCTATCCTCTTACCGTGGGTGCTGCAAAGATTGTGCGGGAAAGATTGGATTTTCCTAAGGTAATGCAGAAGATATTAGTGTTTGAATCTCCTAATGAAAGTCAAGATTATATCCATTCTTTATTCCAGAGGTTTTTAAAGGCTAGTGATAAAATAACAAATAAAGACTGTAAAAGAATGAAACTTGCGAGGGAGGAAATGTCATTTAAATCTGGAAATGTATATCGGTGGGCATGTAGAAATGCTGTCGAGATGCTAAATTGTCAAATGAATGTTACCCGGCTTGAGAACCTGGAAGCTAATTCCTCAGTTTCTGGCGGTGGCATTTCCTTACATACAAGCACCCCTGCATTGGCAAACGAGGAGAGGGATGTGTGCAATTCAATCACACACCAAAGTAAATCATTGACCAATGCTGCAATTCCGAACACAAGAATAGTTAGCCCTCTGTGTTCTGGCTATTTTCTGCAAGCTGTACCCCATGCTAAGGCAGAAGTTGGTGATTGTCAGAAACTTTCTTGTAGTATCTATGCGGACTGTCACATTGACAGTTTAGCTTCATGTACTAGTGCTTCTGAGCAGTGCCAACATGGCATTGATGAAAATGAATCACTGGAAGTCCAAGAAAGGCATTTGTTGGATATAACTAATGATGAACCTAAGCTTCAGACTTTCTCTGCAACCCATCCGAAGCCTGGTAATTCCCAAGCCAAGCCAGAACATGCTTTTTCTGGGGCGTTAGCTGGTGTATGTGTCAGCCTTTGTCTGCATCCTGTTGACACAATTAAGACAGTTATTCAATCATGCCGTGCTGAACACCGGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGGTTTGCTTGGACTATATCGTGGAATTACCACAAATATTGCATCTTCAGCTCCAATTTCTGCAGTTTATACCTTTTCCTATGAATCAGTCAAAGCAGCTTTGCTTCCTTATCTTCCAAAGGAGTATCATTCTTTTGCCCATTGTGTAGGAGGTGGTTGTGCAAGCATTGCCACATCTTTCATTTTTACTCCTAGTGATCGAATAAAGCAGCAGATGCAAGTTCGTTCTCATTATCGCAACTGTTGGGATGCATTGGTTGGAGTTATCAGAAATGGGGGTTTTACCTCCCTATATGCAGGTTGGATAGCTGTACTATGCCGGAATGTTCCACATTCAATTATCAAGTTTTACACATATGAAAGTTTGAAGGAAGTGATGCCACCAAGTGTTCAACCCAACACATTTCAAACTTTAGTATGTGGAGGATTAGCTGGATCTACTGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGATTCCTGGATCTGCAAACCAATACGATAGTGTGCTCCACGCCCTCCAAAAAATTAGTAAGGGTGAAGGTGTGAAAGGCTTGTACAGGGGGTTGATTCCACGGTTGATTATGTACATGACGCAAGGATCACTGTTTTTTGCTTCATATGAATTTTTCAAGAGGGCATTTTCTCTGGAAGCATCACATCTCACTGATTTATGCGTCCAGGCCAATGACAGAGATGCTGAGAGAGAGAAAACTAGGAAGTAA 1965 0.4127 MSESNKSPKNDHQSIKYWRIQQAGASTQTDLSGVDYSPSLSKNESKQQYGSCQPKSPQILSTAQLISAIGQVCDSASQSLSVLLPKENLNQDDNGFSKEKLLDNIGERKNNLVYTSNGTKFYPLTVGAAKIVRERLDFPKVMQKILVFESPNESQDYIHSLFQRFLKASDKITNKDCKRMKLAREEMSFKSGNVYRWACRNAVEMLNCQMNVTRLENLEANSSVSGGGISLHTSTPALANEERDVCNSITHQSKSLTNAAIPNTRIVSPLCSGYFLQAVPHAKAEVGDCQKLSCSIYADCHIDSLASCTSASEQCQHGIDENESLEVQERHLLDITNDEPKLQTFSATHPKPGNSQAKPEHAFSGALAGVCVSLCLHPVDTIKTVIQSCRAEHRSIFYIGKSIVSDRGLLGLYRGITTNIASSAPISAVYTFSYESVKAALLPYLPKEYHSFAHCVGGGCASIATSFIFTPSDRIKQQMQVRSHYRNCWDALVGVIRNGGFTSLYAGWIAVLCRNVPHSIIKFYTYESLKEVMPPSVQPNTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQIPGSANQYDSVLHALQKISKGEGVKGLYRGLIPRLIMYMTQGSLFFASYEFFKRAFSLEASHLTDLCVQANDRDAEREKTRK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3644g00007 654 FunFam Mitochondrial substrate carrier protein-like 482 641 - -
Vium3644g00007 654 FunFam S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform A 328 449 - -
Vium3644g00007 654 MobiDBLite consensus disorder prediction 26 54 - -
Vium3644g00007 654 ProSiteProfiles Solute carrier (Solcar) repeat profile. 356 440 IPR018108 -
Vium3644g00007 654 ProSiteProfiles Solute carrier (Solcar) repeat profile. 539 627 IPR018108 -
Vium3644g00007 654 SUPERFAMILY Mitochondrial carrier 360 624 IPR023395 -
Vium3644g00007 654 ProSiteProfiles Solute carrier (Solcar) repeat profile. 449 532 IPR018108 -
Vium3644g00007 654 Gene3D Mitochondrial carrier domain 341 450 IPR023395 -
Vium3644g00007 654 Gene3D Mitochondrial carrier domain 451 644 IPR023395 -
Vium3644g00007 654 Pfam Mitochondrial carrier protein 449 533 IPR018108 -
Vium3644g00007 654 Pfam Mitochondrial carrier protein 360 441 IPR018108 -
Vium3644g00007 654 Pfam Mitochondrial carrier protein 540 629 IPR018108 -
Vium3644g00007 654 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 316 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3644g00007 Vium-Chr3644 21850 26453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3644g00007 364 628 Chloroplast and Mitochondria Gene Families AT1G07030 32.491 5.88e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3644g00007 - - pvu:PHAVU_002G289600g 1121.3