Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3644g00006 ATGGTGCCTGTGTTGCAGTGTCTTGAAACTCTAAAAACTCATTTTTCTTATAATGCTGCACGAGAAAATATCCAAAGTTGTTCTAGAAAGAGGTGGGACCAATCAAATCTAATGTCCTCAGAGGAAAGTGACAGTTGCCTCAAGGATGCTTCAAAATTTCAACATGCTTTTGATGGTTCTGTTGGTTCAGATGGAATTGCATCCGTAGATCACACTGGAATAAAGTCTAATGAACTGTTCCACTTGAAGAAAGGGTTGCATGTAGATTATTCTGATGCCAACTTTAATGAAGTATTGAAATTAAACAATTTGGATAGTGTCTCAACTCAATTGCTTTTTAATATAGGAAAAAGGATCCTAAGTGATATATTTGAAAGGAAAAATGGAGATGTACCTCAGGCTCATCGTGCTGCATGCTTGTTGAGGAAAATTCTGCAAGTAATTGAGTTGCGCTTTTCGAATCAAGCTGAAAGCATGAAAAATCAAAACTATCATTTCAAAGCTCGTGAGGGAAAATATCAAACAAGAATACATGCACTTGAGACCTTGGCAGTAGGGACAACTGAAGAGAATGAGATTCTTTCAAGTTGGGTTCAGCAATTGAAGGCTGAACAAACTAAATTTGAGGAGAAGAAGAGACTTGAAGAGCAAGATTTTTCTCATTTAAAGAAAGAAAAAGTTCGTAGTGAAATTGAAATTTCTGCATTGAAGCAAGATTTGGAAATAGCCAAAAGAACACATGAAAAACATGTTTCAGAGTTAGAATTACTTGTTACTGAATCTAAAGCTGAATATGAAAAAAGGATAGAGGAACTTAAGCTTCATCTTGCAGATGCAAGAAAGCAAGTGAAGGAACTAGAGGCATTTTCAGAATCCAGATTTTTGAATTGGAAGAATAAAGAACATAGCTATCAAACTATCGTAAATTTCCAATTTGGAGTTTTCCAGGAGCTGAGAGCATCCATGAAGTCTGTCAAAGATGATGTAATAAAAACAAAAAGAAGCTACTTAGAGGAATTCAAGTACTTTGGAACCAAGTTGAAAGGTCTAGCTGAGGCTGCTGAAAATTATCATGTAGTTCTAGCAGAAAATAGGAAATTGTATAATGAAGTTCAAGATTTGAAAGGTAATATAAGGGTGTATTGTCGTATTAGACCATTTCTTCCAGGGCAAAATCAAAGCCATACAACAATTGAGTTTGTTGGGGATGATGGAGAACTCGTTGTTAGCAATCCTCTTAAACATGGAAAGGAAAATCGTAAACTATTTAAATTTAACAAGGTTTTTGGTCAAGCAACAAGTCAAGAGGAAGTATTCAAGGACACTCAACCACTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCCTATGGTCAAACTGGTTCAGGAAAGACATATACAATGAGCGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCACTTCATGATCTTTTCCATATCTCCCAGACTAGGAGAAGCTCTATTGTTTATGAAGTTGGAGTTCAAATGGTTGAAATTTATAACGAACAAGTTCGTGATTTACTATCAAGCAATGGTCCTCAAAAGAGACTCGGGATTTGGAATACTGCCCAACCAAATGGGTTGGCTGTTCCTGATGCAAGTATGCATTCTGTAAATTCTATGGCAGATGTCCTTGAGTTGATGAATACTGGGTTGATGAATCGAGCAACTAGTGCAACAGCCTTGAATGAAAGAAGTAGTCGATCACACAGTGTTCTCTCTGTTCATGTCCGAGGAACGGATTTGAAGACCAACACACTGTTGCGTGGATGTCTGCATCTTGTAGATCTTGCAGGAAGTGAAAGAGTGGACCGCTCTGAAGCAACTGGAGATAGGCTGAAGGAGGCTCAACATATAAATAAATCACTATCTGCACTTGGAGATGTGATATTTGCCCTATCACAAAAGAATTCACATGTGCCATATAGAAATAGTAAATTGACCCAACTTCTTCAGAGTTCGTTAGGCGGTCAAGCAAAAACCCTTATGTTTGTTCAGCTTAATCCTGATGTTGCTTCATTTTCTGAAACTGTAAGCACCTTGAAGTTTGCTGAAAGGGTTTCTGGCGTTGAGTTAGGCGCTGCTCGTAGCAACAAAGAGGGAAGGGATGTGAGAGAACTTATGGAGCAGTTGGTATCTCTCAAGGATGTTATTGGAAGGAAGGATGAAGAGATTGAGCAGTTACAGTTGCTCAAAGCAAATCAAAATGGTGCAAAGAATGGCATGATCTCAGTTAGACACAGGTCATCATCTCCAAGGAGACTCTCCGTAGGGACTCCCCGAAATAGCACAAGACGTTCGGGAATGAGCAGCCTTAGAGTGAATGGAAAGGCAGCTTCTGACATGGATAACTGCTCAGAATACAGTGATAAGCATTCTGAAGCTGGTTCTCATCAATCAATGGATGATTTCAGGAACAAGTCCAGCTCCCTTCGGTTGAAATTAGCCAGAGATGATATCAGTCAAAATTTCAATGAGGACACTGACCTATTAAGATTTGGAGATGCAGATTCGGAGGAGAGATTAAGTGACATATCTGATGGTGGTCTTTCAATGGGAACCGAAACCGAAGGCTCAATCAGTAGTATTGTGGAGTATACACTTTTCCCTGAACTCGAGAAGGCAGCTGAAGCGACACCAGTGAAGGACAGCAACAAAATCATTAATTTTCCAGCTGAAAGCACAGAAAAGCCAATTATGCCATCCAGAATTCCTAAAGCTGCTCAAGCCTCACAAAAAATGCGGAAAATACCTTCTAGGCTATCATTAAGCAAAACCTCCTCGAAGGCTCCGTCAAGTATGTATATTCAATTAACCTACCCTTTTATTCTGCTATGTCTAATATTTTACTCTCACATCCCTATTTAA 2913 0.39 MVPVLQCLETLKTHFSYNAARENIQSCSRKRWDQSNLMSSEESDSCLKDASKFQHAFDGSVGSDGIASVDHTGIKSNELFHLKKGLHVDYSDANFNEVLKLNNLDSVSTQLLFNIGKRILSDIFERKNGDVPQAHRAACLLRKILQVIELRFSNQAESMKNQNYHFKAREGKYQTRIHALETLAVGTTEENEILSSWVQQLKAEQTKFEEKKRLEEQDFSHLKKEKVRSEIEISALKQDLEIAKRTHEKHVSELELLVTESKAEYEKRIEELKLHLADARKQVKELEAFSESRFLNWKNKEHSYQTIVNFQFGVFQELRASMKSVKDDVIKTKRSYLEEFKYFGTKLKGLAEAAENYHVVLAENRKLYNEVQDLKGNIRVYCRIRPFLPGQNQSHTTIEFVGDDGELVVSNPLKHGKENRKLFKFNKVFGQATSQEEVFKDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPGLSSKSDWGVNYRALHDLFHISQTRRSSIVYEVGVQMVEIYNEQVRDLLSSNGPQKRLGIWNTAQPNGLAVPDASMHSVNSMADVLELMNTGLMNRATSATALNERSSRSHSVLSVHVRGTDLKTNTLLRGCLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALSQKNSHVPYRNSKLTQLLQSSLGGQAKTLMFVQLNPDVASFSETVSTLKFAERVSGVELGAARSNKEGRDVRELMEQLVSLKDVIGRKDEEIEQLQLLKANQNGAKNGMISVRHRSSSPRRLSVGTPRNSTRRSGMSSLRVNGKAASDMDNCSEYSDKHSEAGSHQSMDDFRNKSSSLRLKLARDDISQNFNEDTDLLRFGDADSEERLSDISDGGLSMGTETEGSISSIVEYTLFPELEKAAEATPVKDSNKIINFPAESTEKPIMPSRIPKAAQASQKMRKIPSRLSLSKTSSKAPSSMYIQLTYPFILLCLIFYSHIPI 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3644g00006 970 PRINTS Kinesin heavy chain signature 655 676 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 PRINTS Kinesin heavy chain signature 452 473 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 PRINTS Kinesin heavy chain signature 606 624 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 PRINTS Kinesin heavy chain signature 575 592 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 Coils Coil 198 218 - -
Vium3644g00006 970 MobiDBLite consensus disorder prediction 754 820 - -
Vium3644g00006 970 Pfam Kinesin motor domain 383 703 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 319 707 - -
Vium3644g00006 970 Coils Coil 226 253 - -
Vium3644g00006 970 Gene3D Kinesin motor domain 319 707 IPR036961 -
Vium3644g00006 970 Coils Coil 262 289 - -
Vium3644g00006 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 743 IPR027417 -
Vium3644g00006 970 MobiDBLite consensus disorder prediction 799 820 - -
Vium3644g00006 970 ProSiteProfiles Kinesin motor domain profile. 377 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 SMART kinesin_4 375 713 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium3644g00006 970 PANTHER KINESIN-LIKE PROTEIN KLP-3 210 916 IPR027640 GO:0003777|GO:0007018
Vium3644g00006 970 MobiDBLite consensus disorder prediction 754 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3644g00006 Vium-Chr3644 13065 20585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3644g00006 322 739 Calmodulin-binding Proteins AT5G65930 39.286 7.67e-76 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3644g00006 K10406 - gmx:100812813 1621.68