Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium363g00003 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAACACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAGCAATCTTCCTCAGAGCCAGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATTGGACACCGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTTGCTTCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGTGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACATCTGCGGATTCTTCGAAGAATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGGGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGGAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCCTATCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGCGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATGAGCCCTTCTAATATGGGACTTCGAAGGAACATCAGTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGATGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCGGGAGCAGCATCTTTTCCTTCTCAGCCATTTACAGGTAGCTACAAATTTATGACTTGTCAAATCACTGTTTTTTTTCTAAGCCTGATATCCTTAAAGTAG 1212 0.4505 MLHCLNGSGNLGASCSDMTVLERQREATTKWQHHHHDNHPPYYSATEFHVNLVFSSSSSNLPQSQGLVMARERDDSALSQVLAHSLKPDPGLCPELDTGFGSSSGFLPKENDKKRKALNYKVASESDNKDKRVKVSGEEGESRVTNQTSNRNGKSNANKNNRETSADSSKNNSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREAFPSCGQGLPNIGMVSDMSMCNNPSYVQLNSTQQLVSCCGGLINNVGMSPSNMGLRRNISTTHVPLPEAFIDSSCFTQILPSSNWDGDFQSLYNVAFDQGRAGAASFPSQPFTGSYKFMTCQITVFFLSLISLK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium363g00003 403 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 292 IPR024097 GO:0006355
Vium363g00003 403 CDD bHLH_AtBPE_like 184 263 - -
Vium363g00003 403 SMART finulus 200 250 IPR011598 GO:0046983
Vium363g00003 403 MobiDBLite consensus disorder prediction 118 139 - -
Vium363g00003 403 MobiDBLite consensus disorder prediction 118 182 - -
Vium363g00003 403 FunFam Basic helix-loop-helix transcription factor 191 263 - -
Vium363g00003 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vium363g00003 403 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Vium363g00003 403 MobiDBLite consensus disorder prediction 140 179 - -
Vium363g00003 403 Gene3D - 191 265 IPR036638 GO:0046983
Vium363g00003 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 264 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium363g00003 Vium-Chr363 23878 26246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium363g00003 5 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 37.895 2.58e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium363g00003 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium363g00003 - - vun:114168601 724.931