Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium363g00002 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAACACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAGCAATCTTCCTCAGAGCCAGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATTGGACACCGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTTGCTTCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGTGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACATCTGCGGATTCTTCGAAGAATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGGGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGGAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCCTATCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGTATGCACAGCGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATGAGCCCTTCTAATATGGGACTTCGAAGGAACATCAGTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGATGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCGGGAGCAGCATCTTTTCCTTCTCAGCCATTTACAGGTAGCTACAAATTTATGACTTGTCAAATCACTGTTTTTTTTCTAAGCCTGATATCCTTAAAGTAG 1221 0.4505 MLHCLNGSGNLGASCSDMTVLERQREATTKWQHHHHDNHPPYYSATEFHVNLVFSSSSSNLPQSQGLVMARERDDSALSQVLAHSLKPDPGLCPELDTGFGSSSGFLPKENDKKRKALNYKVASESDNKDKRVKVSGEEGESRVTNQTSNRNGKSNANKNNRETSADSSKNNSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVCTAFPSCGQGLPNIGMVSDMSMCNNPSYVQLNSTQQLVSCCGGLINNVGMSPSNMGLRRNISTTHVPLPEAFIDSSCFTQILPSSNWDGDFQSLYNVAFDQGRAGAASFPSQPFTGSYKFMTCQITVFFLSLISLK 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium363g00002 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 264 IPR036638 GO:0046983
Vium363g00002 406 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Vium363g00002 406 Gene3D - 191 265 IPR036638 GO:0046983
Vium363g00002 406 CDD bHLH_AtBPE_like 184 263 - -
Vium363g00002 406 SMART finulus 200 250 IPR011598 GO:0046983
Vium363g00002 406 MobiDBLite consensus disorder prediction 118 139 - -
Vium363g00002 406 MobiDBLite consensus disorder prediction 118 182 - -
Vium363g00002 406 FunFam Basic helix-loop-helix transcription factor 191 263 - -
Vium363g00002 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vium363g00002 406 MobiDBLite consensus disorder prediction 140 179 - -
Vium363g00002 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 289 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium363g00002 Vium-Chr363 23877 26247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium363g00002 5 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.381 2.67e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium363g00002 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium363g00002 - - vun:114168601 721.079