Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3638g00023 | ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAGAGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAACATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGCGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTGAAGAGGAAACTCATGGGGTTGGTTCCTGCATCTCATCAAAGAATAGCACCCTATCAGCACTCCTCCTCCCAAAACCCTCCCTCACCATTTTCTTCTCAGACATCAATCTACAGAGACTACTGCAACAACTCTCCTTATTACATCCCAGCACCAACCTCATCTTTCCCATGCCTTCAACAAATTTCTGTTCCTTCAAGTAACTACACAAACACAACCTCCTCTCTTCCCTTTTATCAGAACCAAGAGCCTTTGGTCGGTGTTAGTCCCATGCAGTATTACCCCACCACAGACAGTTCCATGCTTGTGTTTGGAAGTGAAACAAGCTGCAGTTCCTCTGATGGGAGCTGCAGCCAGGTGAGCCTTTGCAGAGAGATAAAACAAGAAGAAATGGGATTTCAGAATTTGATGCTTGCAGATCAGCACATGAACAAGTTGATGCTGAGTCAAGGCAACGTGAATCACGATGGAGGTGAAGAGTACGTGAACCAATGGACAGAGAAGCCAAATGGGTGGGTCTTCCAAACGCAAGAAACAGCACTGGATTATGATCTTGAGGTTATTAAGCAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGAGAAGGGAGTGTACTACAACTACTGA | 1002 | 0.4391 | MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLVPASHQRIAPYQHSSSQNPPSPFSSQTSIYRDYCNNSPYYIPAPTSSFPCLQQISVPSSNYTNTTSSLPFYQNQEPLVGVSPMQYYPTTDSSMLVFGSETSCSSSDGSCSQVSLCREIKQEEMGFQNLMLADQHMNKLMLSQGNVNHDGGEEYVNQWTEKPNGWVFQTQETALDYDLEVIKQLISSNSSSNNSNNGYFSIDENKTEKGVYYNY | 333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3638g00023 | 333 | SUPERFAMILY | Homeodomain-like | 11 | 109 | IPR009057 | - | |
| Vium3638g00023 | 333 | FunFam | Transcription factor RAX3 | 7 | 68 | - | - | |
| Vium3638g00023 | 333 | FunFam | Transcription factor MYB36 | 70 | 139 | - | - | |
| Vium3638g00023 | 333 | Gene3D | - | 7 | 68 | - | - | |
| Vium3638g00023 | 333 | CDD | SANT | 16 | 62 | IPR001005 | - | |
| Vium3638g00023 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 117 | IPR017930 | - | |
| Vium3638g00023 | 333 | SMART | sant | 13 | 64 | IPR001005 | - | |
| Vium3638g00023 | 333 | SMART | sant | 67 | 115 | IPR001005 | - | |
| Vium3638g00023 | 333 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
| Vium3638g00023 | 333 | CDD | SANT | 70 | 113 | IPR001005 | - | |
| Vium3638g00023 | 333 | ProSiteProfiles | Myb-like domain profile. | 9 | 62 | IPR001005 | - | |
| Vium3638g00023 | 333 | Pfam | Myb-like DNA-binding domain | 14 | 62 | IPR001005 | - | |
| Vium3638g00023 | 333 | Pfam | Myb-like DNA-binding domain | 69 | 111 | IPR001005 | - | |
| Vium3638g00023 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 62 | IPR017930 | - | |
| Vium3638g00023 | 333 | PANTHER | OS09G0431300 PROTEIN | 1 | 286 | - | - | |
| Vium3638g00023 | 333 | Gene3D | - | 69 | 140 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3638g00023 | Vium-Chr3638 | 207924 | 209950 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3638g00023 | 1 | 119 | MYB Transcription Factor Family | AT5G57620 | 89.076 | 8.81e-78 | 239 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Vium3638g00023 | Myb_DNA-binding | 1.5e-14 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3638g00023 | K09422 | - | gmx:100796382 | 547.74 |