Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3638g00011 ATGGATGCAATTCATCAAGACACACAGGCGTACATCAATGATTTTGAGCTGTACGACTTCGTGGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCTAACTGTGACTTCGGTTCTGACCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGCAAACCCTTTTGACCAGAACTATAACAATGCTGTGAATGTCTATGATCAGAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGGAGATGAAGGGAGAAGGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGAAGAAGAACACGATGGAGAGCATTCTTCTGAAACAACAACAACCACCAAGAATGACGATTCCAAACCCAAACTGAAAAATGACAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCCGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGCGTGAAAACTATCAAGAATCAATTAACAATTCCAAAAATGTGCAAGCTGCTTGGAATAGTCATCCAATCTTCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGTTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGGTCTGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTTGTGGCATCCTTTTCTGGTTGA 972 0.4167 MDAIHQDTQAYINDFELYDFVDNPNFDQFINLIRGENEDANCDFGSDLITDCFVNNQLLPCPANPFDQNYNNAVNVYDQSSTFSSFSCFDGEMKGEGEGEREEEEEEEEHDGEHSSETTTTTKNDDSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVRENYQESINNSKNVQAAWNSHPIFKKIMQVEIVQVEERGYYAKIVCNKGEGVAASLFRALESLAGFSVQNSNLATVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3638g00011 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Vium3638g00011 323 Pfam Helix-loop-helix DNA-binding domain 140 183 IPR011598 GO:0046983
Vium3638g00011 323 MobiDBLite consensus disorder prediction 97 112 - -
Vium3638g00011 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 202 IPR036638 GO:0046983
Vium3638g00011 323 MobiDBLite consensus disorder prediction 91 143 - -
Vium3638g00011 323 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 129 199 - -
Vium3638g00011 323 Gene3D - 123 199 IPR036638 GO:0046983
Vium3638g00011 323 SMART finulus 139 188 IPR011598 GO:0046983
Vium3638g00011 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 313 - -
Vium3638g00011 323 MobiDBLite consensus disorder prediction 113 143 - -
Vium3638g00011 323 Coils Coil 179 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3638g00011 Vium-Chr3638 98184 100051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3638g00011 12 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.866 4.13e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3638g00011 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3638g00011 K26214 - gmx:100805451 456.832