Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3638g00006 ATGTTGTCAGAAATATCAGACATGGAAGGCATGGCCATGGAGGAGCTTGTCTCATGCAACAACGATCCCACCAACATAGCCAAAGGGAAGCGAACAAAGCGACGCCTGAGGCCTTTGTCACCTTGTGTTGTCACCGCCGTTACTGCCACGGCCGCCGCCATGACATCAAGCTGTTCGAGTGCTTCTGGCGGCGGCGGTGGGTCGTTTTCGTCTATCACCTTGGAGGAGGAAGAGGAAGACATGGCAAACTGTTTGATTCTCCTGGCACAGGGAAGAGGAGGAAGCGATCCTCTTCATCACAAGGACTTATGTGATGATGTGAAGACGGAGAAGGGTGGCAGCAAAATTGAATTTTATGTTTACGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGCCACAGAGCGAGTCACAAGAAGCCCAAGGTTGAGGAAAAGAAATCCCCACCACCGTCGTTGCCACCGCCACCGTCTTCGTCCTCGCAACTATTTAATTTTGAAGAAACGAAACCGAATCACATGAAGATTAGCCCTTCCGTTTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGCTTAAATTTCCATGGGAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGACAAGCATTGGGTGGCCACATGAGGAGGCACAGGTCATCTAACAACAATAATACTAATAATATCAATACTGTTGTTGTTCAGACGACAACAACTTCTGACGGTGCCGTTGAAGTTAAGCCTCGGAATGTTCTACAATTGGATCTCAACCTGCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTTCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 915 0.4896 MLSEISDMEGMAMEELVSCNNDPTNIAKGKRTKRRLRPLSPCVVTAVTATAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGSDPLHHKDLCDDVKTEKGGSKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSLPPPPSSSSQLFNFEETKPNHMKISPSVSLQLGCGNNRGGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNNINTVVVQTTTTSDGAVEVKPRNVLQLDLNLPAPEDDLRDSKFQFSGNQNSMMLSAAPALVGCHY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3638g00006 304 PANTHER ZINC FINGER PROTEIN ZAT5 73 288 - -
Vium3638g00006 304 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Vium3638g00006 304 Gene3D Classic Zinc Finger 118 230 - -
Vium3638g00006 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Vium3638g00006 304 SUPERFAMILY beta-beta-alpha zinc fingers 120 230 IPR036236 -
Vium3638g00006 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Vium3638g00006 304 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Vium3638g00006 304 Pfam C2H2-type zinc finger 120 146 - -
Vium3638g00006 304 Pfam C2H2-type zinc finger 208 232 - -
Vium3638g00006 304 SMART c2h2final6 208 230 IPR013087 -
Vium3638g00006 304 SMART c2h2final6 121 143 IPR013087 -
Vium3638g00006 304 MobiDBLite consensus disorder prediction 137 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3638g00006 Vium-Chr3638 58313 59482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3638g00006 21 304 C2H2 Transcription Factor Family AT2G28200 44.371 3.81e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3638g00006 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3638g00006 - - gmx:100788646 384.415