Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3638g00005 ATGATTTCAAGGGTCACATCTAGCTTCCAAAATCATCAGATGTTCCCTGACCATGAAGATTTGGTGTCACCCTCTGTGGAATCTGGCTCAGTTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTCAAGGACAAGGTGAGTGAGGTGCAGGCCCTAGTAGGGGTTATTCTCTCCCCAAATGAAACCCTGCCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCCTAGTCACTGCCTCATCAATGATGTTCGCCTGCCAACAGATGGCTCTCACAACAACCCCTCCAGGTACCAATAATAACACCACTACATGCACCCACAAATTGCACCAGCCCAACAAGTTATTGCCTCACTCAAATTTTGGCACAAATAGAAGTCTGCTTGGTAACATAGCCATAGATATCAGTGACCATCATCAAGGTTGTTTATTTTCTAGCACTGAGTCAGAGCCACTGGACTGGTTTAGTGAAAGCTATAACAACAATAACGACGATAATAGCAATAGCAATATTAGTAAGACTAAGGAAGATGATCCAGGCGTTGTAATTGGTGAAAACAACATGATTATTACTAGAGGTGGAGCTCCAAGGGAAGAACATGAACTTAACGAAGAAGGGTATAGTCATAGAGGGATTTCACCGAAGAATAGTGATGTGATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCATTGAGCAACCCAATTAAGAATAAGGGGAAGTTGGAAGGGGAAAGCGAGTTTTTGATGAGTGTGAAGCCAAAGAGATATTCTTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTCCAGCCATTGAAGTCGATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGATGCAACCAGAAACAGTTCTCTGTGCTCTCTGATCTTAGGACACATGAGAAGCACTGCGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTTCCTTTTCTAGGAAAGACAAACTCATGGGCCATGTTTCTTTGTTCCTCGGACACCAACCAGCTATCAACAATGTTGGTCTCTCGTCATACTCTGGGAAATTGGAGCACCACACATTGCAAATGCAGATTGATGCTACCTCGAGATGA 1257 0.4471 MISRVTSSFQNHQMFPDHEDLVSPSVESGSVSHSSTLLFNLSILKDKVSEVQALVGVILSPNETLPESTSMAISSMNSTIQEILVTASSMMFACQQMALTTTPPGTNNNTTTCTHKLHQPNKLLPHSNFGTNRSLLGNIAIDISDHHQGCLFSSTESEPLDWFSESYNNNNDDNSNSNISKTKEDDPGVVIGENNMIITRGGAPREEHELNEEGYSHRGISPKNSDVIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKGKLEGESEFLMSVKPKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVSLFLGHQPAINNVGLSSYSGKLEHHTLQMQIDATSR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3638g00005 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Vium3638g00005 418 SMART c2h2final6 336 358 IPR013087 -
Vium3638g00005 418 SMART c2h2final6 241 263 IPR013087 -
Vium3638g00005 418 SMART c2h2final6 298 331 IPR013087 -
Vium3638g00005 418 Gene3D Classic Zinc Finger 235 300 - -
Vium3638g00005 418 FunFam Zinc finger protein 574 240 265 - -
Vium3638g00005 418 MobiDBLite consensus disorder prediction 165 189 - -
Vium3638g00005 418 MobiDBLite consensus disorder prediction 165 183 - -
Vium3638g00005 418 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Vium3638g00005 418 Gene3D Classic Zinc Finger 334 384 - -
Vium3638g00005 418 SUPERFAMILY beta-beta-alpha zinc fingers 239 266 IPR036236 -
Vium3638g00005 418 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 395 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3638g00005 Vium-Chr3638 50669 52192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3638g00005 7 99 C2H2 Transcription Factor Family AT5G22890 33.663 6.77e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3638g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3638g00005 - - gsj:114375424 556.214